SorptionSimple Class Reference

#include <sorption.hh>

Inheritance diagram for SorptionSimple:

Collaboration diagram for SorptionSimple:

Public Member Functions
	SorptionSimple (Mesh &init_mesh, Input::Record in_rec)
	~SorptionSimple (void)
Public Member Functions inherited from SorptionBase
	SorptionBase (Mesh &init_mesh, Input::Record in_rec)
virtual	~SorptionBase (void)
void	zero_time_step () override
virtual void	update_solution (void)
void	set_porosity (Field< 3, FieldValue< 3 >::Scalar > &por_m)
void	make_tables (void)
void	output_data (void) override
	Output method. More...
void	output_vector_gather (void) override
Public Member Functions inherited from ReactionTerm
	ReactionTerm (Mesh &init_mesh, Input::Record in_rec)
	Constructor. More...
	~ReactionTerm (void)
	Destructor. More...
void	choose_next_time (void) override
	Disable changes in TimeGovernor by empty method. More...
ReactionTerm &	names (const std::vector< string > &names)
	Sets the names of substances considered in transport. More...
ReactionTerm &	output_stream (OutputTime &ostream)
	Sets the output stream which is given from transport class. More...
ReactionTerm &	concentration_matrix (double **concentration, Distribution *conc_distr, int *el_4_loc, int *row_4_el)
Public Member Functions inherited from EquationBase
	EquationBase ()
	EquationBase (Mesh &mesh, const Input::Record in_rec)
virtual	~EquationBase ()
virtual void	initialize ()
	Initialize fields. More...
virtual void	set_time_upper_constraint (double dt)
virtual void	set_time_lower_constraint (double dt)
TimeGovernor const &	time ()
virtual void	set_time_governor (TimeGovernor &time)
double	planned_time ()
double	solved_time ()
Mesh &	mesh ()
TimeMark::Type	mark_type ()
FieldSet &	data ()
virtual void	get_solution_vector (double *&vector, unsigned int &size)
virtual void	get_parallel_solution_vector (Vec &vector)

Static Public Attributes
static Input::Type::Record	input_type
Static Public Attributes inherited from SorptionBase
static Input::Type::Record	input_type
Static Public Attributes inherited from ReactionTerm
static Input::Type::AbstractRecord	input_type = AbstractRecord("ReactionTerm", "Equation for reading information about simple chemical reactions.")
static Input::Type::Record	input_type_output_record
	Specification of the output record. More...

Protected Member Functions
	SorptionSimple ()
void	isotherm_reinit (std::vector< Isotherm > &isotherms, const ElementAccessor< 3 > &elm) override
Protected Member Functions inherited from SorptionBase
	SorptionBase ()
void	initialize_substance_ids (const std::vector< string > &names, Input::Record in_rec)
void	init_from_input (Input::Record in_rec) override
	Initializes private members of sorption from the input record. More...
void	init_from_input_reaction (Input::Record in_rec)
double **	compute_reaction (double **concentrations, int loc_el)
void	print_sorption_parameters (void)
void	allocate_output_mpi (void)

Additional Inherited Members
Static Public Member Functions inherited from SorptionBase
static Input::Type::Selection	make_output_selection (const string &output_field_name, const string &selection_name)
Protected Attributes inherited from SorptionBase
EqData *	data_
int	nr_of_regions
int	nr_of_points
std::vector< double >	molar_masses
double	solvent_density
std::vector< double >	solubility_vec_
std::vector< double >	table_limit_
std::vector< std::vector < Isotherm > >	isotherms
unsigned int	n_substances_
std::vector< unsigned int >	substance_global_idx_
	Mapping from local indexing of substances to global. More...
double **	conc_solid
Input::Array	output_array
Input::Type::Selection	output_selection
ReactionTerm *	reaction
Vec *	vconc_solid
	PETSC sorbed concentration vector (parallel). More...
Vec *	vconc_solid_out
	PETSC sorbed concentration vector output (gathered - sequential) More...
double **	conc_solid_out
	sorbed concentration array output (gathered - sequential) More...

Detailed Description

Definition at line 16 of file sorption.hh.

Constructor & Destructor Documentation

SorptionSimple::SorptionSimple	(	Mesh &	init_mesh,
		Input::Record	in_rec
	)

Constructor with parameter for initialization of a new declared class member

Definition at line 22 of file sorption.cc.

SorptionSimple::~SorptionSimple

(

void

)

Destructor.

Definition at line 30 of file sorption.cc.

SorptionSimple::SorptionSimple ( )

protected

This method disables to use constructor without parameters.

Member Function Documentation

void SorptionSimple::isotherm_reinit ( std::vector< Isotherm > &  isotherms, const ElementAccessor< 3 > &  elm  )

overrideprotectedvirtual

Implements SorptionBase.

Definition at line 34 of file sorption.cc.

Member Data Documentation

IT::Record SorptionSimple::input_type

static

Initial value:

= IT::Record("Sorption", "Information about all the limited solubility affected adsorptions.")
    .derive_from( ReactionTerm::input_type )
    .copy_keys(SorptionBase::input_type)
    .declare_key("output_fields", IT::Array(make_output_selection("conc_solid", "Sorption_Output")),
            IT::Default("conc_solid"), "List of fields to write to output stream.")

Definition at line 20 of file sorption.hh.

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The documentation for this class was generated from the following files:

• /home/jb/workspace/flow123d/src/reaction/sorption.hh
• /home/jb/workspace/flow123d/src/reaction/sorption.cc