#include <sorption_dual.hh>
Inheritance diagram for SorptionDual:
Collaboration diagram for SorptionDual:
Public Member Functions | |
| SorptionDual (Mesh &init_mesh, Input::Record in_rec) | |
| ~SorptionDual (void) | |
| void | set_porosity_immobile (Field< 3, FieldValue< 3 >::Scalar > &por_imm) |
 Public Member Functions inherited from SorptionBase | |
| SorptionBase (Mesh &init_mesh, Input::Record in_rec) | |
| virtual | ~SorptionBase (void) |
| void | zero_time_step () override |
| virtual void | update_solution (void) |
| void | set_porosity (Field< 3, FieldValue< 3 >::Scalar > &por_m) |
| void | make_tables (void) |
| void | output_data (void) override |
| Output method. More... | |
| void | output_vector_gather (void) override |
| Public Member Functions inherited from ReactionTerm | |
| ReactionTerm (Mesh &init_mesh, Input::Record in_rec) | |
| Constructor. More... | |
| ~ReactionTerm (void) | |
| Destructor. More... | |
| void | choose_next_time (void) override |
| Disable changes in TimeGovernor by empty method. More... | |
| ReactionTerm & | names (const std::vector< string > &names) |
| Sets the names of substances considered in transport. More... | |
| ReactionTerm & | output_stream (OutputTime &ostream) |
| Sets the output stream which is given from transport class. More... | |
| ReactionTerm & | concentration_matrix (double **concentration, Distribution *conc_distr, int *el_4_loc, int *row_4_el) |
| Public Member Functions inherited from EquationBase | |
| EquationBase () | |
| EquationBase (Mesh &mesh, const Input::Record in_rec) | |
| virtual | ~EquationBase () |
| virtual void | initialize () |
| Initialize fields. More... | |
| virtual void | set_time_upper_constraint (double dt) |
| virtual void | set_time_lower_constraint (double dt) |
| TimeGovernor const & | time () |
| virtual void | set_time_governor (TimeGovernor &time) |
| double | planned_time () |
| double | solved_time () |
| Mesh & | mesh () |
| TimeMark::Type | mark_type () |
| FieldSet & | data () |
| virtual void | get_solution_vector (double *&vector, unsigned int &size) |
| virtual void | get_parallel_solution_vector (Vec &vector) |
Protected Member Functions | |
| SorptionDual () | |
| virtual void | isotherm_reinit (std::vector< Isotherm > &isotherms, const ElementAccessor< 3 > &elm)=0 |
| Protected Member Functions inherited from SorptionBase | |
| SorptionBase () | |
| void | initialize_substance_ids (const std::vector< string > &names, Input::Record in_rec) |
| void | init_from_input (Input::Record in_rec) override |
| Initializes private members of sorption from the input record. More... | |
| void | init_from_input_reaction (Input::Record in_rec) |
| double ** | compute_reaction (double **concentrations, int loc_el) |
| void | print_sorption_parameters (void) |
| void | allocate_output_mpi (void) |
Protected Attributes | |
| Field< 3, FieldValue< 3 >::Scalar > | immob_porosity_ |
| Protected Attributes inherited from SorptionBase | |
| EqData * | data_ |
| int | nr_of_regions |
| int | nr_of_points |
| std::vector< double > | molar_masses |
| double | solvent_density |
| std::vector< double > | solubility_vec_ |
| std::vector< double > | table_limit_ |
| std::vector< std::vector < Isotherm > > | isotherms |
| unsigned int | n_substances_ |
| std::vector< unsigned int > | substance_global_idx_ |
| Mapping from local indexing of substances to global. More... | |
| double ** | conc_solid |
| Input::Array | output_array |
| Input::Type::Selection | output_selection |
| ReactionTerm * | reaction |
| Vec * | vconc_solid |
| PETSC sorbed concentration vector (parallel). More... | |
| Vec * | vconc_solid_out |
| PETSC sorbed concentration vector output (gathered - sequential) More... | |
| double ** | conc_solid_out |
| sorbed concentration array output (gathered - sequential) More... | |
| Protected Attributes inherited from ReactionTerm | |
| double ** | concentration_matrix_ |
| int * | el_4_loc |
| Indices of elements belonging to local dofs. More... | |
| int * | row_4_el |
| Indices of rows belonging to elements. More... | |
| Distribution * | distribution |
| Pointer to reference to distribution of elements between processors. More... | |
| vector< string > | names_ |
| Names belonging to substances. More... | |
| OutputTime * | output_stream_ |
| Pointer to a transport output stream. More... | |
| Protected Attributes inherited from EquationBase | |
| bool | equation_empty_ |
| flag is true if only default constructor was called More... | |
| Mesh * | mesh_ |
| TimeGovernor * | time_ |
| Input::Record | input_record_ |
| FieldSet * | eq_data_ |
Additional Inherited Members | |
| Static Public Member Functions inherited from SorptionBase | |
| static Input::Type::Selection | make_output_selection (const string &output_field_name, const string &selection_name) |
| Static Public Attributes inherited from SorptionBase | |
| static Input::Type::Record | input_type |
Detailed Description
Definition at line 19 of file sorption_dual.hh.
Constructor & Destructor Documentation
| SorptionDual::SorptionDual | ( | Mesh & | init_mesh, |
| Input::Record | in_rec | ||
| ) |
Constructor with parameter for initialization of a new declared class member TODO: parameter description
Definition at line 24 of file sorption_dual.cc.
| SorptionDual::~SorptionDual | ( | void | ) |
Destructor.
Definition at line 29 of file sorption_dual.cc.
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protected |
This method disables to use constructor without parameters.
Member Function Documentation
|
protectedpure virtual |
This method will be implemented in descendants - it is different in each zone.
Implements SorptionBase.
Implemented in SorptionImmob, and SorptionMob.
|
inline |
Sets the immobile porosity field.
Definition at line 34 of file sorption_dual.hh.
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Member Data Documentation
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protected |
Definition at line 52 of file sorption_dual.hh.
The documentation for this class was generated from the following files:
- /home/jb/workspace/flow123d/src/reaction/sorption_dual.hh
- /home/jb/workspace/flow123d/src/reaction/sorption_dual.cc
