Sorption model in immobile zone in case dual porosity is considered. More...
#include <sorption.hh>
Inheritance diagram for SorptionImmob:
Collaboration diagram for SorptionImmob:
Public Types | |
| typedef ReactionTerm | FactoryBaseType |
Public Member Functions | |
| SorptionImmob (Mesh &init_mesh, Input::Record in_rec) | |
| Constructor. More... | |
| ~SorptionImmob (void) | |
| Destructor. More... | |
 Public Member Functions inherited from SorptionDual | |
| SorptionDual (Mesh &init_mesh, Input::Record in_rec, const string &output_conc_name, const string &output_selection_name) | |
| Constructor. More... | |
| ~SorptionDual (void) | |
| Destructor. More... | |
| void | set_porosity_immobile (Field< 3, FieldValue< 3 >::Scalar > &por_imm) |
| Sets the immobile porosity field. More... | |
| Public Member Functions inherited from SorptionBase | |
| TYPEDEF_ERR_INFO (EI_ArrayName, std::string) | |
| DECLARE_INPUT_EXCEPTION (ExcSubstanceCountMatch,<< "The size of the input array "<< EI_ArrayName::qval<< " does not match the number of substances.") | |
| SorptionBase (Mesh &init_mesh, Input::Record in_rec) | |
| virtual | ~SorptionBase (void) |
| void | initialize () override |
| Prepares the object to usage. More... | |
| void | zero_time_step () override |
| void | update_solution (void) override |
| Updates the solution. More... | |
| void | output_data (void) override |
| Output method. More... | |
| bool | evaluate_time_constraint (double &time_constraint) override |
| Computes a constraint for time step. More... | |
| Public Member Functions inherited from ReactionTerm | |
| TYPEDEF_ERR_INFO (EI_Substance, std::string) | |
| TYPEDEF_ERR_INFO (EI_Model, std::string) | |
| DECLARE_INPUT_EXCEPTION (ExcUnknownSubstance,<< "Unknown substance name: "<< EI_Substance::qval) | |
| DECLARE_INPUT_EXCEPTION (ExcWrongDescendantModel,<< "Impossible descendant model: "<< EI_Model::qval) | |
| ReactionTerm (Mesh &init_mesh, Input::Record in_rec) | |
| Constructor. More... | |
| ~ReactionTerm (void) | |
| Destructor. More... | |
| void | choose_next_time (void) override |
| Disable changes in TimeGovernor by empty method. More... | |
| ReactionTerm & | substances (SubstanceList &substances) |
| Sets the names of substances considered in transport. More... | |
| ReactionTerm & | output_stream (std::shared_ptr< OutputTime > ostream) |
| Sets the output stream which is given from transport class. More... | |
| ReactionTerm & | concentration_matrix (double **concentration, Distribution *conc_distr, LongIdx *el_4_loc, LongIdx *row_4_el) |
| Public Member Functions inherited from EquationBase | |
| EquationBase () | |
| EquationBase (Mesh &mesh, const Input::Record in_rec) | |
| virtual | ~EquationBase () |
| virtual void | set_time_upper_constraint (double dt, std::string message) |
| virtual void | set_time_lower_constraint (double dt, std::string message) |
| TimeGovernor & | time () |
| virtual void | set_time_governor (TimeGovernor &time) |
| double | planned_time () |
| double | solved_time () |
| Mesh & | mesh () |
| TimeMark::Type | mark_type () |
| FieldSet & | data () |
| virtual void | get_solution_vector (double *&vector, unsigned int &size) |
| virtual void | get_parallel_solution_vector (Vec &vector) |
Static Public Member Functions | |
| static const Input::Type::Record & | get_input_type () |
| Static Public Member Functions inherited from SorptionBase | |
| static const Input::Type::Record & | get_input_type () |
| static Input::Type::Instance | make_output_type (const string &equation_name, const string &output_field_name) |
| Static Public Member Functions inherited from ReactionTerm | |
| static Input::Type::Abstract & | it_abstract_term () |
| static Input::Type::Abstract & | it_abstract_mobile_term () |
| static Input::Type::Abstract & | it_abstract_immobile_term () |
| static Input::Type::Abstract & | it_abstract_reaction () |
Protected Member Functions | |
| void | compute_common_ele_data (const ElementAccessor< 3 > &elem) override |
Computes CommonElementData. More... | |
| Protected Member Functions inherited from SorptionBase | |
| SorptionBase () | |
| void | make_reactions () |
| void | initialize_substance_ids () |
| Reads names of substances from input and creates indexing to global vector of substance. More... | |
| void | initialize_from_input () |
| Initializes private members of sorption from the input record. More... | |
| void | initialize_fields () |
| Initializes field sets. More... | |
| void | set_initial_condition () |
| Reads and sets initial condition for concentration in solid. More... | |
| void | allocate_output_mpi (void) |
| Allocates petsc vectors, prepares them for output and creates vector scatter. More... | |
| void | output_vector_gather (void) override |
| Gathers all the parallel vectors to enable them to be output. More... | |
| double ** | compute_reaction (double **concentrations, int loc_el) override |
| void | isotherm_reinit (unsigned int i_subst, const ElementAccessor< 3 > &elm) |
| Reinitializes the isotherm. More... | |
| void | isotherm_reinit_all (const ElementAccessor< 3 > &elm) |
Calls isotherm_reinit for all isotherms. More... | |
| void | make_tables (void) |
| void | update_max_conc () |
| Computes maximal aqueous concentration at the current step. More... | |
| void | clear_max_conc () |
| Sets max conc to zeros on all regins. More... | |
Static Private Attributes | |
| static const int | registrar |
| Registrar of class to factory. More... | |
Additional Inherited Members | |
| Protected Attributes inherited from SorptionDual | |
| Field< 3, FieldValue< 3 >::Scalar > | immob_porosity_ |
| Protected Attributes inherited from SorptionBase | |
| EqData * | data_ |
| Pointer to equation data. The object is constructed in descendants. More... | |
| unsigned int | n_interpolation_steps_ |
| double | solvent_density_ |
| std::vector< double > | solubility_vec_ |
| std::vector< double > | table_limit_ |
| std::vector< std::vector< double > > | max_conc |
| std::vector< std::vector< Isotherm > > | isotherms |
| unsigned int | n_substances_ |
| std::vector< unsigned int > | substance_global_idx_ |
| Mapping from local indexing of substances to global. More... | |
| double ** | conc_solid |
| std::shared_ptr< ReactionTerm > | reaction_liquid |
| std::shared_ptr< ReactionTerm > | reaction_solid |
| std::vector< std::shared_ptr< FieldFE< 3, FieldValue< 3 >::Scalar > > > | output_field_ptr |
Fields correspond with conc_solid_out. More... | |
| struct SorptionBase::CommonElementData | common_ele_data |
| VecScatter | vconc_out_scatter |
| Output vector scatter. More... | |
| Vec * | vconc_solid |
| PETSC sorbed concentration vector (parallel). More... | |
| std::vector< VectorSeqDouble > | conc_solid_out |
| sorbed concentration array output (gathered - sequential) More... | |
| Protected Attributes inherited from ReactionTerm | |
| double ** | concentration_matrix_ |
| LongIdx * | el_4_loc_ |
| Indices of elements belonging to local dofs. More... | |
| LongIdx * | row_4_el_ |
| Indices of rows belonging to elements. More... | |
| Distribution * | distribution_ |
| Pointer to reference to distribution of elements between processors. More... | |
| SubstanceList | substances_ |
| Names belonging to substances. More... | |
| std::shared_ptr< OutputTime > | output_stream_ |
| Pointer to a transport output stream. More... | |
| Protected Attributes inherited from EquationBase | |
| bool | equation_empty_ |
| flag is true if only default constructor was called More... | |
| Mesh * | mesh_ |
| TimeGovernor * | time_ |
| Input::Record | input_record_ |
| FieldSet * | eq_data_ |
| std::shared_ptr< Balance > | balance_ |
| object for calculation and writing the mass balance to file. More... | |
Detailed Description
Sorption model in immobile zone in case dual porosity is considered.
Definition at line 132 of file sorption.hh.
Member Typedef Documentation
Definition at line 135 of file sorption.hh.
Constructor & Destructor Documentation
| SorptionImmob::SorptionImmob | ( | Mesh & | init_mesh, |
| Input::Record | in_rec | ||
| ) |
Constructor.
Definition at line 162 of file sorption.cc.
| SorptionImmob::~SorptionImmob | ( | void | ) |
Destructor.
Definition at line 166 of file sorption.cc.
Member Function Documentation
|
overrideprotectedvirtual |
|
static |
Definition at line 145 of file sorption.cc.
Member Data Documentation
|
staticprivate |
Initial value:
=
Input::register_class< SorptionImmob, Mesh &, Input::Record >("SorptionImmobile") +
Registrar of class to factory.
Definition at line 151 of file sorption.hh.
The documentation for this class was generated from the following files:
- /opt/flow123d/flow123d/src/reaction/sorption.hh
- /opt/flow123d/flow123d/src/reaction/sorption.cc
