#include <reaction_term.hh>
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| TYPEDEF_ERR_INFO (EI_Substance, std::string) |
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| TYPEDEF_ERR_INFO (EI_Model, std::string) |
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| DECLARE_INPUT_EXCEPTION (ExcUnknownSubstance,<< "Unknown substance name: "<< EI_Substance::qval) |
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| DECLARE_INPUT_EXCEPTION (ExcWrongDescendantModel,<< "Impossible descendant model: "<< EI_Model::qval) |
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| ReactionTerm (Mesh &init_mesh, Input::Record in_rec) |
| Constructor. More...
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| ~ReactionTerm (void) |
| Destructor. More...
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virtual void | output_data (void) override |
| Output method. More...
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void | choose_next_time (void) override |
| Disable changes in TimeGovernor by empty method. More...
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ReactionTerm & | substances (SubstanceList &substances) |
| Sets the names of substances considered in transport. More...
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ReactionTerm & | output_stream (std::shared_ptr< OutputTime > ostream) |
| Sets the output stream which is given from transport class. More...
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virtual bool | evaluate_time_constraint (double &time_constraint)=0 |
| Computes a constraint for time step. More...
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ReactionTerm & | concentration_matrix (double **concentration, Distribution *conc_distr, IdxInt *el_4_loc, IdxInt *row_4_el) |
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| EquationBase () |
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| EquationBase (Mesh &mesh, const Input::Record in_rec) |
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virtual void | initialize () |
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virtual void | zero_time_step () |
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virtual | ~EquationBase () |
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virtual void | update_solution () |
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virtual void | set_time_upper_constraint (double dt, std::string message) |
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virtual void | set_time_lower_constraint (double dt, std::string message) |
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TimeGovernor & | time () |
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virtual void | set_time_governor (TimeGovernor &time) |
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double | planned_time () |
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double | solved_time () |
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Mesh & | mesh () |
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TimeMark::Type | mark_type () |
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FieldSet & | data () |
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virtual void | get_solution_vector (double *&vector, unsigned int &size) |
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virtual void | get_parallel_solution_vector (Vec &vector) |
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Definition at line 33 of file reaction_term.hh.
Constructor.
- Parameters
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init_mesh | is the reference to the computational mesh |
in_rec | is the input record |
Definition at line 51 of file reaction_term.cc.
ReactionTerm::~ReactionTerm |
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void |
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void ReactionTerm::choose_next_time |
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void |
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overridevirtual |
virtual double** ReactionTerm::compute_reaction |
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double ** |
concentrations, |
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int |
loc_el |
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protectedpure virtual |
Sets the pointer to concentration matrix for the mobile zone, all substances and on all elements (given by transport).
Definition at line 76 of file reaction_term.hh.
ReactionTerm::DECLARE_INPUT_EXCEPTION |
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ExcUnknownSubstance |
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<< "Unknown substance name: "<< EI_Substance::qval |
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ReactionTerm::DECLARE_INPUT_EXCEPTION |
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ExcWrongDescendantModel |
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<< "Impossible descendant model: "<< EI_Model::qval |
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virtual bool ReactionTerm::evaluate_time_constraint |
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double & |
time_constraint | ) |
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pure virtual |
Abstract & ReactionTerm::it_abstract_immobile_term |
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static |
Abstract & ReactionTerm::it_abstract_mobile_term |
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Abstract & ReactionTerm::it_abstract_reaction |
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Abstract & ReactionTerm::it_abstract_term |
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static |
Static variable for definition of common input record in reaction term.
Definition at line 25 of file reaction_term.cc.
virtual void ReactionTerm::output_data |
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void |
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inlineoverridevirtual |
Output method.
Some reaction models have their own data to output (sorption, dual porosity)
- this is where it must be reimplemented. On the other hand, some do not have (linear reaction, pade approximant)
- that is why it is not pure virtual.
Reimplemented from EquationBase.
Reimplemented in SorptionBase, and DualPorosity.
Definition at line 94 of file reaction_term.hh.
Sets the output stream which is given from transport class.
Definition at line 66 of file reaction_term.hh.
virtual void ReactionTerm::output_vector_gather |
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void |
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inlineprotectedvirtual |
Sets the names of substances considered in transport.
Definition at line 62 of file reaction_term.hh.
ReactionTerm::TYPEDEF_ERR_INFO |
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EI_Substance |
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std::string |
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ReactionTerm::TYPEDEF_ERR_INFO |
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EI_Model |
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std::string |
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double** ReactionTerm::concentration_matrix_ |
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protected |
Pointer to two-dimensional array[species][elements] containing concentrations.
Definition at line 114 of file reaction_term.hh.
Pointer to reference to distribution of elements between processors.
Definition at line 122 of file reaction_term.hh.
IdxInt* ReactionTerm::el_4_loc_ |
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std::shared_ptr<OutputTime> ReactionTerm::output_stream_ |
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IdxInt* ReactionTerm::row_4_el_ |
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protected |
Names belonging to substances.
Must be same as in the transport.
Definition at line 128 of file reaction_term.hh.
The documentation for this class was generated from the following files: