assemble_ode_matrix(void)=0 | FirstOrderReactionBase | protectedpure virtual |
balance_ | EquationBase | protected |
bifurcation_ | FirstOrderReactionBase | protected |
choose_next_time(void) override | ReactionTerm | virtual |
compute_reaction(double **concentrations, int loc_el) override | FirstOrderReactionBase | protectedvirtual |
concentration_matrix(double **concentration, Distribution *conc_distr, IdxInt *el_4_loc, IdxInt *row_4_el) | ReactionTerm | inline |
concentration_matrix_ | ReactionTerm | protected |
data() | EquationBase | inline |
DECLARE_INPUT_EXCEPTION(ExcUnknownSubstance,<< "Unknown substance name: "<< EI_Substance::qval) | ReactionTerm | |
DECLARE_INPUT_EXCEPTION(ExcWrongDescendantModel,<< "Impossible descendant model: "<< EI_Model::qval) | ReactionTerm | |
distribution_ | ReactionTerm | protected |
el_4_loc_ | ReactionTerm | protected |
eq_data_ | EquationBase | protected |
equation_empty_ | EquationBase | protected |
EquationBase() | EquationBase | |
EquationBase(Mesh &mesh, const Input::Record in_rec) | EquationBase | |
evaluate_time_constraint(double &time_constraint) override | FirstOrderReactionBase | virtual |
find_subst_name(const std::string &name) | FirstOrderReactionBase | protected |
FirstOrderReactionBase(Mesh &init_mesh, Input::Record in_rec) | FirstOrderReactionBase | |
get_parallel_solution_vector(Vec &vector) | EquationBase | inlinevirtual |
get_solution_vector(double *&vector, unsigned int &size) | EquationBase | inlinevirtual |
initialize() override | FirstOrderReactionBase | virtual |
initialize_from_input()=0 | FirstOrderReactionBase | protectedpure virtual |
input_record_ | EquationBase | protected |
it_abstract_immobile_term() | ReactionTerm | static |
it_abstract_mobile_term() | ReactionTerm | static |
it_abstract_reaction() | ReactionTerm | static |
it_abstract_term() | ReactionTerm | static |
linear_ode_solver_ | FirstOrderReactionBase | protected |
mark_type() | EquationBase | inline |
mesh() | EquationBase | inline |
mesh_ | EquationBase | protected |
molar_mat_inverse_ | FirstOrderReactionBase | protected |
molar_matrix_ | FirstOrderReactionBase | protected |
n_substances_ | FirstOrderReactionBase | protected |
output_data(void) override | ReactionTerm | inlinevirtual |
output_stream(std::shared_ptr< OutputTime > ostream) | ReactionTerm | inline |
output_stream_ | ReactionTerm | protected |
output_vector_gather(void) | ReactionTerm | inlineprotectedvirtual |
planned_time() | EquationBase | inline |
prev_conc_ | FirstOrderReactionBase | protected |
reaction_matrix_ | FirstOrderReactionBase | protected |
ReactionTerm(Mesh &init_mesh, Input::Record in_rec) | ReactionTerm | |
row_4_el_ | ReactionTerm | protected |
set_time_governor(TimeGovernor &time) | EquationBase | virtual |
set_time_lower_constraint(double dt, std::string message) | EquationBase | inlinevirtual |
set_time_upper_constraint(double dt, std::string message) | EquationBase | inlinevirtual |
solved_time() | EquationBase | inline |
substance_ids_ | FirstOrderReactionBase | protected |
substances(SubstanceList &substances) | ReactionTerm | inline |
substances_ | ReactionTerm | protected |
time() | EquationBase | inline |
time_ | EquationBase | protected |
TYPEDEF_ERR_INFO(EI_Substance, std::string) | ReactionTerm | |
TYPEDEF_ERR_INFO(EI_Model, std::string) | ReactionTerm | |
update_solution(void) override | FirstOrderReactionBase | virtual |
zero_time_step() override | FirstOrderReactionBase | virtual |
~EquationBase() | EquationBase | inlinevirtual |
~FirstOrderReactionBase(void) | FirstOrderReactionBase | |
~ReactionTerm(void) | ReactionTerm | |