Flow123d  JS_before_hm-1881-gd692239a6
assembly_lmh.hh
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1 /*
2  * assembly_lmh.hh
3  *
4  * Created on: Apr 21, 2016
5  * Author: jb
6  */
7 
8 #ifndef SRC_ASSEMBLY_LMH_HH_
9 #define SRC_ASSEMBLY_LMH_HH_
10 
11 #include "system/index_types.hh"
12 #include "system/fmt/posix.h"
13 #include "mesh/mesh.h"
14 #include "mesh/accessors.hh"
15 #include "mesh/neighbours.h"
16 #include "fem/mapping_p1.hh"
17 #include "fem/fe_p.hh"
18 #include "fem/fe_values.hh"
19 #include "fem/fe_rt.hh"
20 #include "fem/fe_values_views.hh"
21 #include "fem/fe_system.hh"
23 
24 #include "la/linsys_PETSC.hh"
25 // #include "la/linsys_BDDC.hh"
26 #include "la/schur.hh"
27 #include "la/local_system.hh"
28 
29 #include "coupling/balance.hh"
30 #include "flow/assembly_mh.hh"
31 #include "flow/darcy_flow_lmh.hh"
32 #include "flow/mortar_assembly.hh"
33 
34 /** Copy of the assembly class for MH implementation,
35  * with Lumping and further improvements.
36  * Used also for Richards.
37  */
38 template <int dim>
39 class AssemblyLMH : public AssemblyBase
40 {
41 public:
42  typedef std::shared_ptr<DarcyLMH::EqData> AssemblyDataPtrLMH;
43 
45  : quad_(dim, 2),
46  velocity_interpolation_quad_(dim, 0), // veloctiy values in barycenter
47  ad_(data)
48  {
50  velocity_interpolation_fv_.initialize(velocity_interpolation_quad_, fe_rt_, update_values | update_quadrature_points);
51  // local numbering of dofs for MH system
52  // note: this shortcut supposes that the fe_system is the same on all elements
53  // TODO the function should be DiscreteSpace.fe(ElementAccessor)
54  // and correct form fe(ad_->dh_->own_range().begin()->elm()) (see documentation of DiscreteSpace::fe)
55  auto fe = ad_->dh_->ds()->fe()[Dim<dim>{}];
56  FESystem<dim>* fe_system = dynamic_cast<FESystem<dim>*>(fe.get());
57  loc_side_dofs = fe_system->fe_dofs(0);
58  loc_ele_dof = fe_system->fe_dofs(1)[0];
59  loc_edge_dofs = fe_system->fe_dofs(2);
60 
61  FEAL_ASSERT(ad_->mortar_method_ == DarcyFlowInterface::NoMortar)
62  .error("Mortar methods are not supported in Lumped Mixed-Hybrid Method.");
63  // if (ad_->mortar_method_ == DarcyFlowInterface::MortarP0) {
64  // mortar_assembly = std::make_shared<P0_CouplingAssembler>(ad_);
65  // } else if (ad_->mortar_method_ == DarcyFlowInterface::MortarP1) {
66  // mortar_assembly = std::make_shared<P1_CouplingAssembler>(ad_);
67  // }
68 
69  // reconstructed vector for the velocity and pressure
70  // length = local Schur complement offset in LocalSystem
71  schur_offset_ = loc_edge_dofs[0];
72  reconstructed_solution_.zeros(schur_offset_);
73  }
74 
75 
76  ~AssemblyLMH<dim>() override
77  {}
78 
79  void fix_velocity(const DHCellAccessor&) override
80  {
81  // if (mortar_assembly)
82  // mortar_assembly->fix_velocity(ele_ac);
83  }
84 
85  void assemble_reconstruct(const DHCellAccessor& dh_cell) override
86  {
87  ASSERT_EQ_DBG(dh_cell.dim(), dim);
88 
89  assemble_local_system(dh_cell, false); //do not switch dirichlet in seepage when reconstructing
90 
91  // TODO:
92  // if (mortar_assembly)
93  // mortar_assembly->assembly(ele_ac);
94  // if (mortar_assembly)
95  // mortar_assembly->fix_velocity(ele_ac);
96 
97  arma::vec schur_solution = ad_->p_edge_solution.get_subvec(loc_schur_.row_dofs);
98  // reconstruct the velocity and pressure
99  loc_system_.reconstruct_solution_schur(schur_offset_, schur_solution, reconstructed_solution_);
100 
101  // postprocess the velocity
102  postprocess_velocity(dh_cell, reconstructed_solution_);
103 
104  ad_->full_solution.set_subvec(loc_system_.row_dofs.head(schur_offset_), reconstructed_solution_);
105  ad_->full_solution.set_subvec(loc_system_.row_dofs.tail(loc_schur_.row_dofs.n_elem), schur_solution);
106  }
107 
108  void assemble(const DHCellAccessor& dh_cell) override
109  {
110  ASSERT_EQ_DBG(dh_cell.dim(), dim);
111  save_local_system_ = false;
112  bc_fluxes_reconstruted = false;
113 
114  assemble_local_system(dh_cell, true); //do use_dirichlet_switch
115 
116  loc_system_.compute_schur_complement(schur_offset_, loc_schur_, true);
117 
118  save_local_system(dh_cell);
119 
120  loc_schur_.eliminate_solution();
121  ad_->lin_sys_schur->set_local_system(loc_schur_, ad_->dh_cr_->get_local_to_global_map());
122 
123  // TODO:
124  // if (mortar_assembly)
125  // mortar_assembly->assembly(dh_cell);
126  }
127 
128  void update_water_content(const DHCellAccessor&) override
129  {};
130 
131 protected:
132  static unsigned int size()
133  {
134  // dofs: velocity, pressure, edge pressure
136  }
137 
138  void assemble_local_system(const DHCellAccessor& dh_cell, bool use_dirichlet_switch)
139  {
140  set_dofs(dh_cell);
141 
142  assemble_bc(dh_cell, use_dirichlet_switch);
143  assemble_sides(dh_cell);
144  assemble_element(dh_cell);
145  assemble_source_term(dh_cell);
146  assembly_dim_connections(dh_cell);
147  }
148 
149  /** Loads the local system from a map: element index -> LocalSystem,
150  * if it exits, or if the full solution is not yet reconstructed,
151  * and reconstructs the full solution on the element.
152  * Currently used only for seepage BC.
153  */
154  void load_local_system(const DHCellAccessor& dh_cell)
155  {
156  // do this only once per element
157  if(bc_fluxes_reconstruted)
158  return;
159 
160  // possibly find the corresponding local system
161  auto ls = ad_->seepage_bc_systems.find(dh_cell.elm_idx());
162  if (ls != ad_->seepage_bc_systems.end())
163  {
164  arma::vec schur_solution = ad_->p_edge_solution.get_subvec(loc_schur_.row_dofs);
165  // reconstruct the velocity and pressure
166  ls->second.reconstruct_solution_schur(schur_offset_, schur_solution, reconstructed_solution_);
167 
168  postprocess_velocity(dh_cell, reconstructed_solution_);
169 
170  bc_fluxes_reconstruted = true;
171  }
172  }
173 
174 
175  /// Saves the local system to a map: element index -> LocalSystem.
176  /// Currently used only for seepage BC.
177  void save_local_system(const DHCellAccessor& dh_cell)
178  {
179  // for seepage BC, save local system
180  if(save_local_system_)
181  ad_->seepage_bc_systems[dh_cell.elm_idx()] = loc_system_;
182  }
183 
184 
185  void set_dofs(const DHCellAccessor& dh_cell){
186  const ElementAccessor<3> ele = dh_cell.elm();
187  const DHCellAccessor dh_cr_cell = dh_cell.cell_with_other_dh(ad_->dh_cr_.get());
188 
189  unsigned int loc_size = size() + ele->n_neighs_vb();
190  unsigned int loc_size_schur = ele->n_sides() + ele->n_neighs_vb();
191  LocDofVec dofs(loc_size);
192  LocDofVec dofs_schur(loc_size_schur);
193 
194  // add full vec indices
195  dofs.head(dh_cell.n_dofs()) = dh_cell.get_loc_dof_indices();
196  // add schur vec indices
197  dofs_schur.head(dh_cr_cell.n_dofs()) = dh_cr_cell.get_loc_dof_indices();
198 
199  if(ele->n_neighs_vb() != 0)
200  {
201  //D, E',E block: compatible connections: element-edge
202  unsigned int i = 0;
203 
204  for ( DHCellSide neighb_side : dh_cell.neighb_sides() ) {
205 
206  // read neighbor dofs (dh dofhandler)
207  // neighbor cell owning neighb_side
208  DHCellAccessor dh_neighb_cell = neighb_side.cell();
209 
210  // read neighbor dofs (dh_cr dofhandler)
211  // neighbor cell owning neighb_side
212  DHCellAccessor dh_neighb_cr_cell = dh_neighb_cell.cell_with_other_dh(ad_->dh_cr_.get());
213 
214  // local index of pedge dof in local system
215  const unsigned int p = size()+i;
216  // local index of pedge dof on neighboring cell
217  const unsigned int t = dh_neighb_cell.n_dofs() - dh_neighb_cr_cell.n_dofs() + neighb_side.side().side_idx();
218  dofs[p] = dh_neighb_cell.get_loc_dof_indices()[t];
219 
220  // local index of pedge dof in local schur system
221  const unsigned int tt = dh_cr_cell.n_dofs()+i;
222  dofs_schur[tt] = dh_neighb_cr_cell.get_loc_dof_indices()
223  [neighb_side.side().side_idx()];
224  i++;
225  }
226  }
227  loc_system_.reset(dofs, dofs);
228  loc_schur_.reset(dofs_schur, dofs_schur);
229  }
230 
231 
232  void assemble_bc(const DHCellAccessor& dh_cell, bool use_dirichlet_switch){
233  const ElementAccessor<3> ele = dh_cell.elm();
234 
235  dirichlet_edge.resize(ele->n_sides());
236  for(DHCellSide dh_side : dh_cell.side_range()){
237  unsigned int sidx = dh_side.side_idx();
238  dirichlet_edge[sidx] = 0;
239 
240  // assemble BC
241  if (dh_side.side().is_boundary()) {
242  double cross_section = ad_->cross_section.value(ele.centre(), ele);
243  assemble_side_bc(dh_side, cross_section, use_dirichlet_switch);
244 
245  ad_->balance->add_flux_values(ad_->water_balance_idx, dh_side,
246  {loc_system_.row_dofs[loc_side_dofs[sidx]]},
247  {1}, 0);
248  }
249 
250  // side-edge (flux-lambda) terms
251  loc_system_.add_value(loc_side_dofs[sidx], loc_edge_dofs[sidx], 1.0);
252  loc_system_.add_value(loc_edge_dofs[sidx], loc_side_dofs[sidx], 1.0);
253  }
254  }
255 
256 
257  void assemble_side_bc(const DHCellSide& side, double cross_section, bool use_dirichlet_switch)
258  {
259  const unsigned int sidx = side.side_idx();
260  const unsigned int side_row = loc_side_dofs[sidx]; //local
261  const unsigned int edge_row = loc_edge_dofs[sidx]; //local
262 
263  ElementAccessor<3> b_ele = side.cond().element_accessor();
264  DarcyMH::EqData::BC_Type type = (DarcyMH::EqData::BC_Type)ad_->bc_type.value(b_ele.centre(), b_ele);
265 
266  if ( type == DarcyMH::EqData::none) {
267  // homogeneous neumann
268  } else if ( type == DarcyMH::EqData::dirichlet ) {
269  double bc_pressure = ad_->bc_pressure.value(b_ele.centre(), b_ele);
270  loc_schur_.set_solution(sidx, bc_pressure);
271  dirichlet_edge[sidx] = 1;
272 
273  } else if ( type == DarcyMH::EqData::total_flux) {
274  // internally we work with outward flux
275  double bc_flux = -ad_->bc_flux.value(b_ele.centre(), b_ele);
276  double bc_pressure = ad_->bc_pressure.value(b_ele.centre(), b_ele);
277  double bc_sigma = ad_->bc_robin_sigma.value(b_ele.centre(), b_ele);
278 
279  dirichlet_edge[sidx] = 2; // to be skipped in LMH source assembly
280  loc_system_.add_value(edge_row, edge_row,
281  -b_ele.measure() * bc_sigma * cross_section,
282  (bc_flux - bc_sigma * bc_pressure) * b_ele.measure() * cross_section);
283  }
284  else if (type==DarcyMH::EqData::seepage) {
285  ad_->is_linear=false;
286 
287  char & switch_dirichlet = ad_->bc_switch_dirichlet[b_ele.idx()];
288  double bc_pressure = ad_->bc_switch_pressure.value(b_ele.centre(), b_ele);
289  double bc_flux = -ad_->bc_flux.value(b_ele.centre(), b_ele);
290  double side_flux = bc_flux * b_ele.measure() * cross_section;
291 
292  // ** Update BC type. **
293  if(use_dirichlet_switch){ // skip BC change if only reconstructing the solution
294  if (switch_dirichlet) {
295  // check and possibly switch to flux BC
296  // The switch raise error on the corresponding edge row.
297  // Magnitude of the error is abs(solution_flux - side_flux).
298 
299  // try reconstructing local system for seepage BC
300  load_local_system(side.cell());
301  double solution_flux = reconstructed_solution_[side_row];
302 
303  if ( solution_flux < side_flux) {
304  //DebugOut().fmt("x: {}, to neum, p: {} f: {} -> f: {}\n", b_ele.centre()[0], bc_pressure, solution_flux, side_flux);
305  switch_dirichlet=0;
306  }
307  } else {
308  // check and possibly switch to pressure BC
309  // TODO: What is the appropriate DOF in not local?
310  // The switch raise error on the corresponding side row.
311  // Magnitude of the error is abs(solution_head - bc_pressure)
312  // Since usually K is very large, this error would be much
313  // higher then error caused by the inverse switch, this
314  // cause that a solution with the flux violating the
315  // flux inequality leading may be accepted, while the error
316  // in pressure inequality is always satisfied.
317 
318  double solution_head = ad_->p_edge_solution.get(loc_schur_.row_dofs[sidx]);
319 
320  if ( solution_head > bc_pressure) {
321  //DebugOut().fmt("x: {}, to dirich, p: {} -> p: {} f: {}\n",b_ele.centre()[0], solution_head, bc_pressure, bc_flux);
322  switch_dirichlet=1;
323  }
324  }
325  }
326 
327  save_local_system_ = (bool) switch_dirichlet;
328 
329  // ** Apply BCUpdate BC type. **
330  // Force Dirichlet type during the first iteration of the unsteady case.
331  if (switch_dirichlet || ad_->force_no_neumann_bc ) {
332  //DebugOut().fmt("x: {}, dirich, bcp: {}\n", b_ele.centre()[0], bc_pressure);
333  loc_schur_.set_solution(sidx, bc_pressure);
334  dirichlet_edge[sidx] = 1;
335  } else {
336  //DebugOut()("x: {}, neuman, q: {} bcq: {}\n", b_ele.centre()[0], side_flux, bc_flux);
337  loc_system_.add_value(edge_row, side_flux);
338  }
339 
340  } else if (type==DarcyMH::EqData::river) {
341  ad_->is_linear=false;
342 
343  double bc_pressure = ad_->bc_pressure.value(b_ele.centre(), b_ele);
344  double bc_switch_pressure = ad_->bc_switch_pressure.value(b_ele.centre(), b_ele);
345  double bc_flux = -ad_->bc_flux.value(b_ele.centre(), b_ele);
346  double bc_sigma = ad_->bc_robin_sigma.value(b_ele.centre(), b_ele);
347 
348  double solution_head = ad_->p_edge_solution.get(loc_schur_.row_dofs[sidx]);
349 
350  // Force Robin type during the first iteration of the unsteady case.
351  if (solution_head > bc_switch_pressure || ad_->force_no_neumann_bc) {
352  // Robin BC
353  //DebugOut().fmt("x: {}, robin, bcp: {}\n", b_ele.centre()[0], bc_pressure);
354  loc_system_.add_value(edge_row, edge_row,
355  -b_ele.measure() * bc_sigma * cross_section,
356  b_ele.measure() * cross_section * (bc_flux - bc_sigma * bc_pressure) );
357  } else {
358  // Neumann BC
359  //DebugOut().fmt("x: {}, neuman, q: {} bcq: {}\n", b_ele.centre()[0], bc_switch_pressure, bc_pressure);
360  double bc_total_flux = bc_flux + bc_sigma*(bc_switch_pressure - bc_pressure);
361 
362  loc_system_.add_value(edge_row, bc_total_flux * b_ele.measure() * cross_section);
363  }
364  }
365  else {
366  THROW( ExcBCNotSupported() );
367  }
368  }
369 
370 
371  virtual void assemble_sides(const DHCellAccessor& dh_cell)
372  {
373  const ElementAccessor<3> ele = dh_cell.elm();
374  double cs = ad_->cross_section.value(ele.centre(), ele);
375  double conduct = ad_->conductivity.value(ele.centre(), ele);
376  double scale = 1 / cs /conduct;
377 
378  assemble_sides_scale(dh_cell, scale);
379  }
380 
381  void assemble_sides_scale(const DHCellAccessor& dh_cell, double scale)
382  {
383  arma::vec3 &gravity_vec = ad_->gravity_vec_;
384  auto ele = dh_cell.elm();
385 
386  fe_values_.reinit(ele);
387  unsigned int ndofs = fe_values_.n_dofs();
388  unsigned int qsize = fe_values_.n_points();
389  auto velocity = fe_values_.vector_view(0);
390 
391  for (unsigned int k=0; k<qsize; k++)
392  for (unsigned int i=0; i<ndofs; i++){
393  double rhs_val =
394  arma::dot(gravity_vec,velocity.value(i,k))
395  * fe_values_.JxW(k);
396  loc_system_.add_value(i, rhs_val);
397 
398  for (unsigned int j=0; j<ndofs; j++){
399  double mat_val =
400  arma::dot(velocity.value(i,k), //TODO: compute anisotropy before
401  (ad_->anisotropy.value(ele.centre(), ele)).i()
402  * velocity.value(j,k))
403  * scale * fe_values_.JxW(k);
404 
405  loc_system_.add_value(i, j, mat_val);
406  }
407  }
408 
409  // assemble matrix for weights in BDDCML
410  // approximation to diagonal of
411  // S = -C - B*inv(A)*B'
412  // as
413  // diag(S) ~ - diag(C) - 1./diag(A)
414  // the weights form a partition of unity to average a discontinuous solution from neighbouring subdomains
415  // to a continuous one
416  // it is important to scale the effect - if conductivity is low for one subdomain and high for the other,
417  // trust more the one with low conductivity - it will be closer to the truth than an arithmetic average
418 // if ( typeid(*ad_->lin_sys) == typeid(LinSys_BDDC) ) {
419 // const arma::mat& local_matrix = loc_system_.get_matrix();
420 // for(unsigned int i=0; i < ndofs; i++) {
421 // double val_side = local_matrix(i,i);
422 // double val_edge = -1./local_matrix(i,i);
423 //
424 // unsigned int side_row = loc_system_.row_dofs[loc_side_dofs[i]];
425 // unsigned int edge_row = loc_system_.row_dofs[loc_edge_dofs[i]];
426 // static_cast<LinSys_BDDC*>(ad_->lin_sys)->diagonal_weights_set_value( side_row, val_side );
427 // static_cast<LinSys_BDDC*>(ad_->lin_sys)->diagonal_weights_set_value( edge_row, val_edge );
428 // }
429 // }
430  }
431 
432 
434  // set block B, B': element-side, side-element
435 
436  for(unsigned int side = 0; side < loc_side_dofs.size(); side++){
437  loc_system_.add_value(loc_ele_dof, loc_side_dofs[side], -1.0);
438  loc_system_.add_value(loc_side_dofs[side], loc_ele_dof, -1.0);
439  }
440 
441 // if ( typeid(*ad_->lin_sys) == typeid(LinSys_BDDC) ) {
442 // double val_ele = 1.;
443 // static_cast<LinSys_BDDC*>(ad_->lin_sys)->
444 // diagonal_weights_set_value( loc_system_.row_dofs[loc_ele_dof], val_ele );
445 // }
446  }
447 
448  virtual void assemble_source_term(const DHCellAccessor& dh_cell)
449  {
450  const ElementAccessor<3> ele = dh_cell.elm();
451 
452  // compute lumped source
453  double alpha = 1.0 / ele->n_sides();
454  double cross_section = ad_->cross_section.value(ele.centre(), ele);
455  double coef = alpha * ele.measure() * cross_section;
456 
457  double source = ad_->water_source_density.value(ele.centre(), ele)
458  + ad_->extra_source.value(ele.centre(), ele);
459  double source_term = coef * source;
460 
461  // in unsteady, compute time term
462  double storativity = 0.0;
463  double time_term_diag = 0.0, time_term = 0.0, time_term_rhs = 0.0;
464 
465  if(! ad_->use_steady_assembly_)
466  {
467  storativity = ad_->storativity.value(ele.centre(), ele)
468  + ad_->extra_storativity.value(ele.centre(), ele);
469  time_term = coef * storativity;
470  }
471 
472  for (unsigned int i=0; i<ele->n_sides(); i++)
473  {
474  if(! ad_->use_steady_assembly_)
475  {
476  time_term_diag = time_term / ad_->time_step_;
477  time_term_rhs = time_term_diag * ad_->p_edge_solution_previous_time.get(loc_schur_.row_dofs[i]);
478 
479  ad_->balance->add_mass_values(ad_->water_balance_idx, dh_cell,
480  {loc_system_.row_dofs[loc_edge_dofs[i]]}, {time_term}, 0);
481  }
482  else
483  {
484  // Add zeros explicitely to keep the sparsity pattern.
485  // Otherwise Petsc would compress out the zeros in FinishAssembly.
486  ad_->balance->add_mass_values(ad_->water_balance_idx, dh_cell,
487  {loc_system_.row_dofs[loc_edge_dofs[i]]}, {0}, 0);
488  }
489 
490  this->loc_system_.add_value(loc_edge_dofs[i], loc_edge_dofs[i],
491  -time_term_diag,
492  -source_term - time_term_rhs);
493 
494  ad_->balance->add_source_values(ad_->water_balance_idx, ele.region().bulk_idx(),
495  {loc_system_.row_dofs[loc_edge_dofs[i]]}, {0},{source_term});
496  }
497  }
498 
500  //D, E',E block: compatible connections: element-edge
501  const ElementAccessor<3> ele = dh_cell.elm();
502 
503  // no Neighbours => nothing to asssemble here
504  if(ele->n_neighs_vb() == 0) return;
505 
506  ASSERT_LT_DBG(ele->dim(), 3);
507  arma::vec3 nv;
508 
509  unsigned int i = 0;
510  for ( DHCellSide neighb_side : dh_cell.neighb_sides() ) {
511  // every compatible connection adds a 2x2 matrix involving
512  // current element pressure and a connected edge pressure
513  unsigned int p = size()+i; // loc dof of higher ele edge
514 
515  ElementAccessor<3> ele_higher = neighb_side.cell().elm();
516  ngh_values_.fe_side_values_.reinit(neighb_side.side());
517  nv = ngh_values_.fe_side_values_.normal_vector(0);
518 
519  double value = ad_->sigma.value( ele.centre(), ele) *
520  2*ad_->conductivity.value( ele.centre(), ele) *
521  arma::dot(ad_->anisotropy.value( ele.centre(), ele)*nv, nv) *
522  ad_->cross_section.value( neighb_side.centre(), ele_higher ) * // cross-section of higher dim. (2d)
523  ad_->cross_section.value( neighb_side.centre(), ele_higher ) /
524  ad_->cross_section.value( ele.centre(), ele ) * // crossection of lower dim.
525  neighb_side.measure();
526 
527  loc_system_.add_value(loc_ele_dof, loc_ele_dof, -value);
528  loc_system_.add_value(loc_ele_dof, p, value);
529  loc_system_.add_value(p,loc_ele_dof, value);
530  loc_system_.add_value(p,p, -value);
531 
532 // // update matrix for weights in BDDCML
533 // if ( typeid(*ad_->lin_sys) == typeid(LinSys_BDDC) ) {
534 // int ind = loc_system_.row_dofs[p];
535 // // there is -value on diagonal in block C!
536 // static_cast<LinSys_BDDC*>(ad_->lin_sys)->diagonal_weights_set_value( ind, -value );
537 // }
538  ++i;
539  }
540  }
541 
542 
543  void postprocess_velocity(const DHCellAccessor& dh_cell, arma::vec& solution)
544  {
545  const ElementAccessor<3> ele = dh_cell.elm();
546 
547  double edge_scale = ele.measure()
548  * ad_->cross_section.value(ele.centre(), ele)
549  / ele->n_sides();
550 
551  double edge_source_term = edge_scale *
552  ( ad_->water_source_density.value(ele.centre(), ele)
553  + ad_->extra_source.value(ele.centre(), ele));
554 
555  postprocess_velocity_specific(dh_cell, solution, edge_scale, edge_source_term);
556  }
557 
558  virtual void postprocess_velocity_specific(const DHCellAccessor& dh_cell, arma::vec& solution,
559  double edge_scale, double edge_source_term)// override
560  {
561  const ElementAccessor<3> ele = dh_cell.elm();
562 
563  double storativity = ad_->storativity.value(ele.centre(), ele)
564  + ad_->extra_storativity.value(ele.centre(), ele);
565  double new_pressure, old_pressure, time_term = 0.0;
566 
567  for (unsigned int i=0; i<ele->n_sides(); i++) {
568 
569  if( ! ad_->use_steady_assembly_)
570  {
571  new_pressure = ad_->p_edge_solution.get(loc_schur_.row_dofs[i]);
572  old_pressure = ad_->p_edge_solution_previous_time.get(loc_schur_.row_dofs[i]);
573  time_term = edge_scale * storativity / ad_->time_step_ * (new_pressure - old_pressure);
574  }
575  solution[loc_side_dofs[i]] += edge_source_term - time_term;
576  }
577  }
578 
579  // assembly volume integrals
583 
584  NeighSideValues<dim<3?dim:2> ngh_values_;
585 
586  // Interpolation of velocity into barycenters
587  QGauss velocity_interpolation_quad_;
588  FEValues<3> velocity_interpolation_fv_;
589 
590  // data shared by assemblers of different dimension
591  AssemblyDataPtrLMH ad_;
592 
593  /** TODO: Investigate why the hell do we need this flag.
594  * If removed, it does not break any of the integration tests,
595  * however it must influence the Dirichlet rows in matrix.
596  */
597  std::vector<unsigned int> dirichlet_edge;
598 
599  LocalSystem loc_system_;
600  LocalSystem loc_schur_;
601  std::vector<unsigned int> loc_side_dofs;
602  std::vector<unsigned int> loc_edge_dofs;
603  unsigned int loc_ele_dof;
604 
605  // std::shared_ptr<MortarAssemblyBase> mortar_assembly;
606 
607  /// Index offset in the local system for the Schur complement.
608  unsigned int schur_offset_;
609 
610  /// Vector for reconstruted solution (velocity and pressure on element) from Schur complement.
611  arma::vec reconstructed_solution_;
612 
613  /// Flag for saving the local system.
614  /// Currently used only in case of seepage BC.
615  bool save_local_system_;
616 
617  /// Flag indicating whether the fluxes for seepage BC has been reconstructed already.
618  bool bc_fluxes_reconstruted;
619 };
620 
621 
622 #endif /* SRC_ASSEMBLY_LMH_HH_ */
Element::n_neighs_vb
unsigned int n_neighs_vb() const
Return number of neighbours.
Definition: elements.h:68
LocDofVec
arma::Col< IntIdx > LocDofVec
Definition: index_types.hh:28
FE_RT0
Raviart-Thomas element of order 0.
Definition: fe_rt.hh:60
DarcyMH::EqData::BC_Type
BC_Type
Definition: darcy_flow_mh.hh:152
Armor::vec
ArmaVec< double, N > vec
Definition: armor.hh:885
fe_rt.hh
Definitions of Raviart-Thomas finite elements.
FEValues::vector_view
const FEValuesViews::Vector< spacedim > & vector_view(unsigned int i) const
Accessor to vector values of multicomponent FE.
Definition: fe_values.hh:277
FEValues::n_points
unsigned int n_points() const
Returns the number of quadrature points.
Definition: fe_values.hh:296
AssemblyLMH::fe_values_
FEValues< 3 > fe_values_
Definition: assembly_lmh.hh:582
fe_values_views.hh
LocalSystem
Definition: local_system.hh:45
RefElement
Definition: ref_element.hh:339
DarcyMH::EqData::dirichlet
@ dirichlet
Definition: darcy_flow_mh.hh:154
neighbours.h
Element::dim
unsigned int dim() const
Definition: elements.h:127
DHCellSide::cond
Boundary cond() const
Definition: dh_cell_accessor.hh:231
FEValues::JxW
double JxW(const unsigned int point_no)
Return the product of Jacobian determinant and the quadrature weight at given quadrature point.
Definition: fe_values.hh:223
AssemblyLMH::fe_rt_
FE_RT0< dim > fe_rt_
Definition: assembly_lmh.hh:580
fe_values.hh
Class FEValues calculates finite element data on the actual cells such as shape function values,...
value
static constexpr bool value
Definition: json.hpp:87
update_values
@ update_values
Shape function values.
Definition: update_flags.hh:87
AssemblyLMH::assemble_bc
void assemble_bc(const DHCellAccessor &dh_cell, bool use_dirichlet_switch)
Definition: assembly_lmh.hh:232
AssemblyLMH::assemble_reconstruct
void assemble_reconstruct(const DHCellAccessor &dh_cell) override
Definition: assembly_lmh.hh:85
AssemblyLMH::assemble_sides_scale
void assemble_sides_scale(const DHCellAccessor &dh_cell, double scale)
Definition: assembly_lmh.hh:381
FEValues::initialize
void initialize(Quadrature &_quadrature, FiniteElement< DIM > &_fe, UpdateFlags _flags)
Initialize structures and calculates cell-independent data.
Definition: fe_values.cc:137
THROW
#define THROW(whole_exception_expr)
Wrapper for throw. Saves the throwing point.
Definition: exceptions.hh:53
std::vector< unsigned int >
ElementAccessor< 3 >
DarcyMH::EqData::total_flux
@ total_flux
Definition: darcy_flow_mh.hh:155
update_quadrature_points
@ update_quadrature_points
Transformed quadrature points.
Definition: update_flags.hh:102
arma::vec3
Definition: doxy_dummy_defs.hh:17
AssemblyLMH::assemble
void assemble(const DHCellAccessor &dh_cell) override
Definition: assembly_lmh.hh:108
ASSERT_EQ_DBG
#define ASSERT_EQ_DBG(a, b)
Definition of comparative assert macro (EQual) only for debug mode.
Definition: asserts.hh:332
AssemblyLMH
Definition: assembly_lmh.hh:39
DHCellAccessor::dim
unsigned int dim() const
Return dimension of element appropriate to cell.
Definition: dh_cell_accessor.hh:101
linsys_PETSC.hh
Solver based on the original PETSc solver using MPIAIJ matrix and succesive Schur complement construc...
darcy_flow_lmh.hh
Lumped mixed-hybrid model of linear Darcy flow, possibly unsteady.
index_types.hh
fe_system.hh
Class FESystem for compound finite elements.
AssemblyLMH::assemble_element
void assemble_element(FMT_UNUSED const DHCellAccessor &dh_cell)
Definition: assembly_lmh.hh:433
Dim
Definition: mixed.hh:25
FEValues< 3 >
fe_p.hh
Definitions of basic Lagrangean finite elements with polynomial shape functions.
AssemblyLMH::assembly_dim_connections
void assembly_dim_connections(const DHCellAccessor &dh_cell)
Definition: assembly_lmh.hh:499
mortar_assembly.hh
DarcyMH::EqData::none
@ none
Definition: darcy_flow_mh.hh:153
DHCellSide
Side accessor allows to iterate over sides of DOF handler cell.
Definition: dh_cell_accessor.hh:176
DarcyMH::EqData::river
@ river
Definition: darcy_flow_mh.hh:157
DarcyFlowInterface::NoMortar
@ NoMortar
Definition: darcy_flow_interface.hh:31
FEAL_ASSERT
#define FEAL_ASSERT(expr)
Definition of assert for debug and release mode.
Definition: asserts.hh:280
FEValues::n_dofs
unsigned int n_dofs() const
Returns the number of shape functions.
Definition: fe_values.hh:302
DHCellAccessor::side_range
Range< DHCellSide > side_range() const
Returns range of cell sides.
Definition: dh_cell_accessor.hh:458
accessors.hh
DHCellAccessor::cell_with_other_dh
DHCellAccessor cell_with_other_dh(const DOFHandlerMultiDim *dh) const
Create new accessor with same local idx and given DOF handler. Actual and given DOF handler must be c...
Definition: dh_cell_accessor.hh:135
DHCellSide::cell
const DHCellAccessor & cell() const
Return DHCellAccessor appropriate to the side.
Definition: dh_cell_accessor.hh:204
DHCellAccessor::neighb_sides
RangeConvert< DHNeighbSide, DHCellSide > neighb_sides() const
Returns range of neighbour cell of lower dimension corresponding to cell of higher dimension.
Definition: dh_cell_accessor.hh:465
AssemblyLMH::set_dofs
void set_dofs(const DHCellAccessor &dh_cell)
Definition: assembly_lmh.hh:185
quadrature_lib.hh
Definitions of particular quadrature rules on simplices.
schur.hh
Assembly explicit Schur complement for the given linear system. Provides method for resolution of the...
AssemblyLMH::assemble_sides
virtual void assemble_sides(const DHCellAccessor &dh_cell)
Definition: assembly_lmh.hh:371
AssemblyLMH::fix_velocity
void fix_velocity(const DHCellAccessor &) override
Definition: assembly_lmh.hh:79
DHCellAccessor::elm
const ElementAccessor< 3 > elm() const
Return ElementAccessor to element of loc_ele_idx_.
Definition: dh_cell_accessor.hh:71
local_system.hh
mesh.h
DHCellAccessor::n_dofs
unsigned int n_dofs() const
Return number of dofs on given cell.
Definition: dh_cell_accessor.hh:420
Boundary::element_accessor
ElementAccessor< 3 > element_accessor()
Definition: accessors_impl.hh:253
DHCellAccessor::elm_idx
unsigned int elm_idx() const
Return serial idx to element of loc_ele_idx_.
Definition: dh_cell_accessor.hh:64
AssemblyLMH::update_water_content
void update_water_content(const DHCellAccessor &) override
Updates water content in Richards.
Definition: assembly_lmh.hh:128
QGauss
Symmetric Gauss-Legendre quadrature formulae on simplices.
Definition: quadrature_lib.hh:34
Element::n_sides
unsigned int n_sides() const
Definition: elements.h:138
AssemblyLMH::save_local_system
void save_local_system(const DHCellAccessor &dh_cell)
Definition: assembly_lmh.hh:177
DHCellAccessor
Cell accessor allow iterate over DOF handler cells.
Definition: dh_cell_accessor.hh:43
AssemblyLMH::quad_
QGauss quad_
Definition: assembly_lmh.hh:581
FESystem::fe_dofs
std::vector< unsigned int > fe_dofs(unsigned int fe_index)
Return dof indices belonging to given sub-FE.
Definition: fe_system.cc:267
ElementAccessor::region
Region region() const
Definition: accessors.hh:201
AssemblyLMH::postprocess_velocity_specific
virtual void postprocess_velocity_specific(const DHCellAccessor &dh_cell, arma::vec &solution, double edge_scale, double edge_source_term)
Definition: assembly_lmh.hh:558
AssemblyLMH::AssemblyDataPtrLMH
std::shared_ptr< DarcyLMH::EqData > AssemblyDataPtrLMH
Definition: assembly_lmh.hh:42
update_JxW_values
@ update_JxW_values
Transformed quadrature weights.
Definition: update_flags.hh:114
NeighSideValues
Definition: assembly_mh.hh:65
ASSERT_LT_DBG
#define ASSERT_LT_DBG(a, b)
Definition of comparative assert macro (Less Than) only for debug mode.
Definition: asserts.hh:300
AssemblyLMH::assemble_side_bc
void assemble_side_bc(const DHCellSide &side, double cross_section, bool use_dirichlet_switch)
Definition: assembly_lmh.hh:257
DHCellAccessor::get_loc_dof_indices
LocDofVec get_loc_dof_indices() const
Returns the local indices of dofs associated to the cell on the local process.
Definition: dh_cell_accessor.hh:88
assembly_mh.hh
ElementAccessor::idx
unsigned int idx() const
Return local idx of element in boundary / bulk part of element vector.
Definition: accessors.hh:223
AssemblyBase
Definition: assembly_base.hh:34
mapping_p1.hh
Class MappingP1 implements the affine transformation of the unit cell onto the actual cell.
balance.hh
AssemblyLMH::size
static unsigned int size()
Definition: assembly_lmh.hh:132
FEValues::reinit
void reinit(const ElementAccessor< spacedim > &cell)
Update cell-dependent data (gradients, Jacobians etc.)
Definition: fe_values.cc:536
AssemblyLMH::postprocess_velocity
void postprocess_velocity(const DHCellAccessor &dh_cell, arma::vec &solution)
Definition: assembly_lmh.hh:543
DarcyMH::EqData::seepage
@ seepage
Definition: darcy_flow_mh.hh:156
DHCellSide::side_idx
unsigned int side_idx() const
Definition: dh_cell_accessor.hh:235
AssemblyLMH::load_local_system
void load_local_system(const DHCellAccessor &dh_cell)
Definition: assembly_lmh.hh:154
posix.h
AssemblyLMH::assemble_local_system
void assemble_local_system(const DHCellAccessor &dh_cell, bool use_dirichlet_switch)
Definition: assembly_lmh.hh:138
RegionIdx::bulk_idx
unsigned int bulk_idx() const
Returns index of the region in the bulk set.
Definition: region.hh:91
FESystem
Compound finite element on dim dimensional simplex.
Definition: fe_system.hh:101
AssemblyLMH::assemble_source_term
virtual void assemble_source_term(const DHCellAccessor &dh_cell)
Definition: assembly_lmh.hh:448
ElementAccessor::measure
double measure() const
Computes the measure of the element.
Definition: accessors_impl.hh:67
ElementAccessor::centre
arma::vec::fixed< spacedim > centre() const
Computes the barycenter.
Definition: accessors_impl.hh:89
FMT_UNUSED
#define FMT_UNUSED
Definition: posix.h:75