#include <msh_gmshreader.h>

Inheritance diagram for GmshMeshReader:

Collaboration diagram for GmshMeshReader:

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Public Member Functions
	TYPEDEF_ERR_INFO (EI_GMSHFile, std::string)

	TYPEDEF_ERR_INFO (EI_Section, std::string)

	TYPEDEF_ERR_INFO (EI_ElementId, int)

	TYPEDEF_ERR_INFO (EI_ElementType, int)

	TYPEDEF_ERR_INFO (EI_Position, std::string)

	DECLARE_EXCEPTION (ExcMissingSection,<< "Missing section "<< EI_Section::qval<< " in the GMSH input file: "<< EI_GMSHFile::qval)

	DECLARE_EXCEPTION (ExcUnsupportedType,<< "Element "<< EI_ElementId::val<< "in the GMSH input file "<< EI_GMSHFile::qval<< " is of the unsupported type "<< EI_ElementType::val)

	DECLARE_EXCEPTION (ExcZeroNodes,<< "Zero number of nodes, "<< EI_Position::val<< ".\n")

	DECLARE_EXCEPTION (ExcZeroElements,<< "Zero number of elements, "<< EI_Position::val<< ".\n")

	DECLARE_EXCEPTION (ExcTooManyElementTags,<< "At least two element tags have to be defined for element with id="<< EI_ElementId::val<< ", "<< EI_Position::val<< ".\n")

	GmshMeshReader (const FilePath &file_name)

virtual	~GmshMeshReader ()

void	read_physical_names (Mesh *mesh) override

MeshDataHeader &	find_header (HeaderQuery &header_query) override

Public Member Functions inherited from BaseMeshReader
	TYPEDEF_ERR_INFO (EI_FieldName, std::string)

	TYPEDEF_ERR_INFO (EI_Time, double)

	TYPEDEF_ERR_INFO (EI_MeshFile, std::string)

	TYPEDEF_ERR_INFO (EI_Type, std::string)

	TYPEDEF_ERR_INFO (EI_TokenizerMsg, std::string)

	TYPEDEF_ERR_INFO (EI_FileExtension, std::string)

	DECLARE_INPUT_EXCEPTION (ExcFieldNameNotFound,<< "No data for field: "<< EI_FieldName::qval<< " and time: "<< EI_Time::val<< " in the input file: "<< EI_MeshFile::qval)

	DECLARE_INPUT_EXCEPTION (ExcMissingFieldDiscretization,<< "Missing data type specification for field: "<< EI_FieldName::qval<< " and time: "<< EI_Time::val<< " in the input file: "<< EI_MeshFile::qval<< "\nPlease, add value of key 'input_discretization'.")

	DECLARE_EXCEPTION (ExcWrongFormat,<< "Wrong format of "<< EI_Type::val<< ", "<< EI_TokenizerMsg::val<< "\n"<< "in the input file: "<< EI_MeshFile::qval)

	DECLARE_EXCEPTION (ExcWrongExtension,<< "Unsupported extension "<< EI_FileExtension::qval<< " of the input file: "<< EI_MeshFile::qval)

	BaseMeshReader (const FilePath &file_name)
	Constructor. More...

void	read_raw_mesh (Mesh *mesh)

template<typename T >
ElementDataCache< T >::ComponentDataPtr	get_element_data (unsigned int n_entities, unsigned int n_components, bool boundary_domain, unsigned int component_idx)

std::vector< int > const &	get_element_vector (bool boundary_domain)

CheckResult	scale_and_check_limits (string field_name, double coef, double default_val, double lower_bound=-std::numeric_limits< double >::max(), double upper_bound=std::numeric_limits< double >::max())

Protected Types
typedef std::map< std::string, std::vector< MeshDataHeader > >	HeaderTable

Protected Types inherited from BaseMeshReader
typedef std::shared_ptr< ElementDataCacheBase >	ElementDataPtr

typedef std::map< string, ElementDataPtr >	ElementDataFieldMap

Protected Member Functions
void	read_nodes (Mesh *mesh)

void	read_elements (Mesh *mesh)

void	read_data_header (MeshDataHeader &head)

void	make_header_table () override

void	read_element_data (ElementDataCacheBase &data_cache, MeshDataHeader actual_header, unsigned int n_components, bool boundary_domain) override

Protected Member Functions inherited from BaseMeshReader
	BaseMeshReader (const FilePath &file_name, std::shared_ptr< ElementDataFieldMap > element_data_values)
	Constructor. More...

Protected Attributes
HeaderTable	header_table_
	Table with data of ElementData headers. More...

Protected Attributes inherited from BaseMeshReader
bool	has_compatible_mesh_

std::string	data_section_name_
	Store name of field data section specify for type of mesh file. More...

std::shared_ptr< ElementDataFieldMap >	element_data_values_
	Cache with last read element data. More...

Tokenizer	tok_
	Tokenizer used for reading ASCII file format. More...

vector< LongIdx >	bulk_elements_id_

vector< LongIdx >	boundary_elements_id_

MeshDataHeader	actual_header_
	Header of actual loaded data. More...

Additional Inherited Members
Static Public Member Functions inherited from BaseMeshReader
static std::shared_ptr< BaseMeshReader >	reader_factory (const FilePath &file_name)

static Mesh *	mesh_factory (const Input::Record &input_mesh_rec)

Detailed Description

Definition at line 35 of file msh_gmshreader.h.

Member Typedef Documentation

typedef std::map< std::string, std::vector<MeshDataHeader> > GmshMeshReader::HeaderTable

protected

Map of ElementData sections in GMSH file.

For each field_name contains vector of MeshDataHeader. Headers are sorted by time in ascending order.

Definition at line 85 of file msh_gmshreader.h.

Constructor & Destructor Documentation

GmshMeshReader::GmshMeshReader ( const FilePath & file_name )

Construct the GMSH format reader from given FilePath. This opens the file for reading.

Definition at line 38 of file msh_gmshreader.cc.

GmshMeshReader::~GmshMeshReader ( )

virtual

Destructor close the file if opened.

Definition at line 49 of file msh_gmshreader.cc.

Member Function Documentation

GmshMeshReader::DECLARE_EXCEPTION	(	ExcMissingSection	,
		<< "Missing section "<< EI_Section::qval<< " in the GMSH input file: "<< EI_GMSHFile::qval
	)

GmshMeshReader::DECLARE_EXCEPTION	(	ExcUnsupportedType	,
		<< "Element "<< EI_ElementId::val<< "in the GMSH input file "<< EI_GMSHFile::qval<< " is of the unsupported type "<< EI_ElementType::val
	)

GmshMeshReader::DECLARE_EXCEPTION	(	ExcZeroNodes	,
		<< "Zero number of	nodes,
		"<< EI_Position::val<< ".\n"
	)

GmshMeshReader::DECLARE_EXCEPTION	(	ExcZeroElements	,
		<< "Zero number of	elements,
		"<< EI_Position::val<< ".\n"
	)

GmshMeshReader::DECLARE_EXCEPTION	(	ExcTooManyElementTags	,
		<< "At least two element tags have to be defined for element with	id = `"<< EI_ElementId::val<< "`,
		"<< EI_Position::val<< ".\n"
	)

BaseMeshReader::MeshDataHeader & GmshMeshReader::find_header ( BaseMeshReader::HeaderQuery & header_query )

overridevirtual

Finds GMSH data header for ElementData given by time and field_name and stores it as actual_header_.

Implements BaseMeshReader.

Definition at line 323 of file msh_gmshreader.cc.

void GmshMeshReader::make_header_table ( )

overrideprotectedvirtual

Reads table of ElementData headers from the tokenizer file.

Implements BaseMeshReader.

Definition at line 296 of file msh_gmshreader.cc.

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void GmshMeshReader::read_data_header ( MeshDataHeader & head )

protected

Reads the header from the tokenizer tok and return it as the second parameter.

Definition at line 195 of file msh_gmshreader.cc.

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void GmshMeshReader::read_element_data	(	ElementDataCacheBase &	data_cache,
		MeshDataHeader	actual_header,
		unsigned int	n_components,
		bool	boundary_domain
	)

overrideprotectedvirtual

Implements BaseMeshReader::read_element_data.

Implements BaseMeshReader.

Definition at line 252 of file msh_gmshreader.cc.

void GmshMeshReader::read_elements ( Mesh * mesh )

protectedvirtual

Method for reading of elements. Input of the mesh allows changing regions within the input CON file. Read section '$PhysicalNames' of the GMSH file and save the physical sections to general data structure.

Region Labels starting with '!' are treated as boundary regions. Elements of these regions are used just to assign regions to the boundary and are not used in actual FEM computations.

Implements BaseMeshReader.

Definition at line 88 of file msh_gmshreader.cc.

void GmshMeshReader::read_nodes ( Mesh * mesh )

protectedvirtual

private method for reading of nodes

Implements BaseMeshReader.

Definition at line 54 of file msh_gmshreader.cc.

void GmshMeshReader::read_physical_names ( Mesh * mesh )

overridevirtual

Read section '$PhysicalNames' of the GMSH file and save the physical sections as regions in the RegionDB.

Region Labels starting with '!' are treated as boundary regions. Elements of these regions are used just to assign regions to the boundary and are not used in actual FEM computations.

Implements BaseMeshReader.

Definition at line 164 of file msh_gmshreader.cc.

GmshMeshReader::TYPEDEF_ERR_INFO	(	EI_GMSHFile	,
		std::string
	)

GmshMeshReader::TYPEDEF_ERR_INFO	(	EI_Section	,
		std::string
	)

GmshMeshReader::TYPEDEF_ERR_INFO	(	EI_ElementId	,
		int
	)

GmshMeshReader::TYPEDEF_ERR_INFO	(	EI_ElementType	,
		int
	)

GmshMeshReader::TYPEDEF_ERR_INFO	(	EI_Position	,
		std::string
	)

Member Data Documentation

HeaderTable GmshMeshReader::header_table_

protected

Table with data of ElementData headers.

Definition at line 116 of file msh_gmshreader.h.

The documentation for this class was generated from the following files:

/opt/flow123d/flow123d/src/io/msh_gmshreader.h
/opt/flow123d/flow123d/src/io/msh_gmshreader.cc

Public Member Functions

Protected Types

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation