| allocate_output_mpi(void) | SorptionBase | protected |
| balance_ | EquationBase | protected |
| choose_next_time(void) override | ReactionTerm | virtual |
| clear_max_conc() | SorptionBase | protected |
| common_ele_data | SorptionBase | protected |
| compute_common_ele_data(const ElementAccessor< 3 > &elem)=0 | SorptionDual | protectedpure virtual |
| compute_reaction(double **concentrations, int loc_el) override | SorptionBase | protectedvirtual |
| conc_solid | SorptionBase | protected |
| conc_solid_out | SorptionBase | protected |
| concentration_matrix(double **concentration, Distribution *conc_distr, LongIdx *el_4_loc, LongIdx *row_4_el) | ReactionTerm | inline |
| concentration_matrix_ | ReactionTerm | protected |
| data() | EquationBase | inline |
| data_ | SorptionBase | protected |
| DECLARE_INPUT_EXCEPTION(ExcSubstanceCountMatch,<< "The size of the input array "<< EI_ArrayName::qval<< " does not match the number of substances.") | SorptionBase | |
| ReactionTerm::DECLARE_INPUT_EXCEPTION(ExcUnknownSubstance,<< "Unknown substance name: "<< EI_Substance::qval) | ReactionTerm | |
| ReactionTerm::DECLARE_INPUT_EXCEPTION(ExcWrongDescendantModel,<< "Impossible descendant model: "<< EI_Model::qval) | ReactionTerm | |
| distribution_ | ReactionTerm | protected |
| el_4_loc_ | ReactionTerm | protected |
| eq_data_ | EquationBase | protected |
| equation_empty_ | EquationBase | protected |
| EquationBase() | EquationBase | |
| EquationBase(Mesh &mesh, const Input::Record in_rec) | EquationBase | |
| evaluate_time_constraint(double &time_constraint) override | SorptionBase | inlinevirtual |
| get_input_type() | SorptionBase | static |
| get_parallel_solution_vector(Vec &vector) | EquationBase | inlinevirtual |
| get_solution_vector(double *&vector, unsigned int &size) | EquationBase | inlinevirtual |
| immob_porosity_ | SorptionDual | protected |
| initialize() override | SorptionBase | virtual |
| initialize_fields() | SorptionBase | protected |
| initialize_from_input() | SorptionBase | protected |
| initialize_substance_ids() | SorptionBase | protected |
| input_record_ | EquationBase | protected |
| isotherm_reinit(unsigned int i_subst, const ElementAccessor< 3 > &elm) | SorptionBase | protected |
| isotherm_reinit_all(const ElementAccessor< 3 > &elm) | SorptionBase | protected |
| isotherms | SorptionBase | protected |
| it_abstract_immobile_term() | ReactionTerm | static |
| it_abstract_mobile_term() | ReactionTerm | static |
| it_abstract_reaction() | ReactionTerm | static |
| it_abstract_term() | ReactionTerm | static |
| make_output_type(const string &equation_name, const string &output_field_name) | SorptionBase | inlinestatic |
| make_reactions() | SorptionBase | protected |
| make_tables(void) | SorptionBase | protected |
| mark_type() | EquationBase | inline |
| max_conc | SorptionBase | protected |
| mesh() | EquationBase | inline |
| mesh_ | EquationBase | protected |
| n_interpolation_steps_ | SorptionBase | protected |
| n_substances_ | SorptionBase | protected |
| output_data(void) override | SorptionBase | virtual |
| output_field_ptr | SorptionBase | protected |
| output_stream(std::shared_ptr< OutputTime > ostream) | ReactionTerm | inline |
| output_stream_ | ReactionTerm | protected |
| output_vector_gather(void) override | SorptionBase | protectedvirtual |
| planned_time() | EquationBase | inline |
| reaction_liquid | SorptionBase | protected |
| reaction_solid | SorptionBase | protected |
| ReactionTerm(Mesh &init_mesh, Input::Record in_rec) | ReactionTerm | |
| row_4_el_ | ReactionTerm | protected |
| set_initial_condition() | SorptionBase | protected |
| set_porosity_immobile(Field< 3, FieldValue< 3 >::Scalar > &por_imm) | SorptionDual | inline |
| set_time_governor(TimeGovernor &time) | EquationBase | virtual |
| set_time_lower_constraint(double dt, std::string message) | EquationBase | inlinevirtual |
| set_time_upper_constraint(double dt, std::string message) | EquationBase | inlinevirtual |
| solubility_vec_ | SorptionBase | protected |
| solved_time() | EquationBase | inline |
| solvent_density_ | SorptionBase | protected |
| SorptionBase(Mesh &init_mesh, Input::Record in_rec) | SorptionBase | |
| SorptionBase() | SorptionBase | protected |
| SorptionDual(Mesh &init_mesh, Input::Record in_rec, const string &output_conc_name, const string &output_selection_name) | SorptionDual | |
| substance_global_idx_ | SorptionBase | protected |
| substances(SubstanceList &substances) | ReactionTerm | inline |
| substances_ | ReactionTerm | protected |
| table_limit_ | SorptionBase | protected |
| time() | EquationBase | inline |
| time_ | EquationBase | protected |
| TYPEDEF_ERR_INFO(EI_ArrayName, std::string) | SorptionBase | |
| ReactionTerm::TYPEDEF_ERR_INFO(EI_Substance, std::string) | ReactionTerm | |
| ReactionTerm::TYPEDEF_ERR_INFO(EI_Model, std::string) | ReactionTerm | |
| update_max_conc() | SorptionBase | protected |
| update_solution(void) override | SorptionBase | virtual |
| vconc_out_scatter | SorptionBase | protected |
| vconc_solid | SorptionBase | protected |
| zero_time_step() override | SorptionBase | virtual |
| ~EquationBase() | EquationBase | inlinevirtual |
| ~ReactionTerm(void) | ReactionTerm | |
| ~SorptionBase(void) | SorptionBase | virtual |
| ~SorptionDual(void) | SorptionDual | |
