Class representing dual porosity model in transport. More...

#include <dual_porosity.hh>

Inheritance diagram for DualPorosity:

Collaboration diagram for DualPorosity:

[legend]

Classes
class	EqData
	DualPorosity data. More...

Public Types
typedef ReactionTerm	FactoryBaseType

Public Types inherited from ReactionTerm
typedef std::vector< std::shared_ptr< FieldFE< 3, FieldValue< 3 >::Scalar > > >	FieldFEScalarVec

Public Member Functions
	DualPorosity (Mesh &init_mesh, Input::Record in_rec)
	Constructor. More...

	~DualPorosity (void)
	Destructor. More...

void	initialize () override
	Prepares the object to usage. More...

void	zero_time_step () override

void	update_solution (void) override

void	output_data (void) override
	Main output routine. More...

Public Member Functions inherited from ReactionTerm
	TYPEDEF_ERR_INFO (EI_Substance, std::string)

	TYPEDEF_ERR_INFO (EI_Model, std::string)

	DECLARE_INPUT_EXCEPTION (ExcUnknownSubstance,<< "Unknown substance name: "<< EI_Substance::qval)

	DECLARE_INPUT_EXCEPTION (ExcWrongDescendantModel,<< "Impossible descendant model: "<< EI_Model::qval)

	ReactionTerm (Mesh &init_mesh, Input::Record in_rec)
	Constructor. More...

	~ReactionTerm (void)
	Destructor. More...

ReactionTerm &	substances (SubstanceList &substances)
	Sets the names of substances considered in transport. More...

ReactionTerm &	output_stream (std::shared_ptr< OutputTime > ostream)
	Sets the output stream which is given from transport class. More...

ReactionTerm &	concentration_fields (FieldFEScalarVec &conc_mobile)

void	choose_next_time (void) override
	Disable changes in TimeGovernor by empty method. More...

Public Member Functions inherited from EquationBase
	EquationBase ()

	EquationBase (Mesh &mesh, const Input::Record in_rec)

virtual	~EquationBase ()

virtual void	set_time_upper_constraint (double dt, std::string message)

virtual void	set_time_lower_constraint (double dt, std::string message)

TimeGovernor &	time ()

virtual void	set_time_governor (TimeGovernor &time)

double	planned_time ()

double	solved_time ()

Mesh &	mesh ()

std::shared_ptr< Balance >	balance () const

TimeMark::Type	mark_type ()

FieldSet &	eq_fieldset ()

Static Public Member Functions
static const Input::Type::Record &	get_input_type ()

Static Public Member Functions inherited from ReactionTerm
static Input::Type::Abstract &	it_abstract_term ()

static Input::Type::Abstract &	it_abstract_mobile_term ()

static Input::Type::Abstract &	it_abstract_immobile_term ()

static Input::Type::Abstract &	it_abstract_reaction ()

Static Public Member Functions inherited from EquationBase
static Input::Type::Record &	record_template ()
	Template Record with common keys for derived equations. More...

Protected Member Functions
	DualPorosity ()

void	make_reactions ()
	Resolves construction of following reactions. More...

void	set_initial_condition ()
	Sets initial condition from input. More...

void	initialize_fields ()
	Initializes field sets. More...

void	compute_reaction (const DHCellAccessor &dh_cell) override
	Compute reaction on a single element. More...

Protected Member Functions inherited from ReactionTerm

Protected Attributes
EqData	data_

FieldSet	input_data_set_

std::shared_ptr< ReactionTerm >	reaction_mobile
	Reaction running in mobile zone. More...

std::shared_ptr< ReactionTerm >	reaction_immobile
	Reaction running in immobile zone. More...

double	scheme_tolerance_
	Dual porosity computational scheme tolerance. More...

Protected Attributes inherited from ReactionTerm
FieldFEScalarVec	conc_mobile_fe
	FieldFEs representing P0 interpolation of mobile concentration (passed from transport). More...

SubstanceList	substances_
	Names belonging to substances. More...

std::shared_ptr< OutputTime >	output_stream_
	Pointer to a transport output stream. More...

std::shared_ptr< DOFHandlerMultiDim >	dof_handler_
	Pointer to DOF handler used through the reaction tree. More...

Protected Attributes inherited from EquationBase
bool	equation_empty_
	flag is true if only default constructor was called More...

Mesh *	mesh_

TimeGovernor *	time_

Input::Record	input_record_

FieldSet *	eq_fieldset_

std::shared_ptr< Balance >	balance_
	object for calculation and writing the mass balance to file. More...

Static Private Attributes
static const int	registrar
	Registrar of class to factory. More...

Detailed Description

Class representing dual porosity model in transport.

Definition at line 50 of file dual_porosity.hh.

Member Typedef Documentation

◆ FactoryBaseType

typedef ReactionTerm DualPorosity::FactoryBaseType

Definition at line 53 of file dual_porosity.hh.

Constructor & Destructor Documentation

◆ DualPorosity() [1/2]

DualPorosity::DualPorosity	(	Mesh &	init_mesh,
		Input::Record	in_rec
	)

Constructor.

Definition at line 109 of file dual_porosity.cc.

◆ ~DualPorosity()

DualPorosity::~DualPorosity ( void )

Destructor.

Definition at line 121 of file dual_porosity.cc.

◆ DualPorosity() [2/2]

DualPorosity::DualPorosity ( )

protected

This method disables to use constructor without parameters.

Member Function Documentation

◆ compute_reaction()

void DualPorosity::compute_reaction ( const DHCellAccessor & dh_cell )

overrideprotectedvirtual

Compute reaction on a single element.

Implements ReactionTerm.

Definition at line 276 of file dual_porosity.cc.

Here is the caller graph for this function:

◆ get_input_type()

const Record & DualPorosity::get_input_type ( )

static

Static variable for new input data types input

Definition at line 47 of file dual_porosity.cc.

◆ initialize()

void DualPorosity::initialize ( )

overridevirtual

Prepares the object to usage.

Allocating memory, reading input, initialization of fields.

Reimplemented from EquationBase.

Definition at line 151 of file dual_porosity.cc.

◆ initialize_fields()

void DualPorosity::initialize_fields ( )

protected

Initializes field sets.

Definition at line 179 of file dual_porosity.cc.

Here is the caller graph for this function:

◆ make_reactions()

void DualPorosity::make_reactions ( )

protected

Resolves construction of following reactions.

Definition at line 126 of file dual_porosity.cc.

Here is the caller graph for this function:

◆ output_data()

void DualPorosity::output_data ( void )

overridevirtual

Main output routine.

Reimplemented from ReactionTerm.

Definition at line 343 of file dual_porosity.cc.

Here is the caller graph for this function:

◆ set_initial_condition()

void DualPorosity::set_initial_condition ( )

protected

Sets initial condition from input.

Definition at line 246 of file dual_porosity.cc.

Here is the caller graph for this function:

◆ update_solution()

void DualPorosity::update_solution ( void )

overridevirtual

Updates the solution according to the dual porosity model.

Reimplemented from EquationBase.

Definition at line 260 of file dual_porosity.cc.

◆ zero_time_step()

void DualPorosity::zero_time_step ( )

overridevirtual

Does first computation after initialization process. The time is set and initial condition is set and output.

Reimplemented from EquationBase.

Definition at line 209 of file dual_porosity.cc.

Member Data Documentation

◆ data_

EqData DualPorosity::data_

protected

Equation data - all data fields are in this set.

Definition at line 129 of file dual_porosity.hh.

◆ input_data_set_

FieldSet DualPorosity::input_data_set_

protected

Input data set - fields in this set are read from the input file.

Definition at line 134 of file dual_porosity.hh.

◆ reaction_immobile

std::shared_ptr<ReactionTerm> DualPorosity::reaction_immobile

protected

Reaction running in immobile zone.

Definition at line 137 of file dual_porosity.hh.

◆ reaction_mobile

std::shared_ptr<ReactionTerm> DualPorosity::reaction_mobile

protected

Reaction running in mobile zone.

Definition at line 136 of file dual_porosity.hh.

◆ registrar

const int DualPorosity::registrar

staticprivate

Initial value:

=
        Input::register_class< DualPorosity, Mesh &, Input::Record >("DualPorosity") +
        DualPorosity::get_input_type().size()

Registrar of class to factory.

Definition at line 147 of file dual_porosity.hh.

◆ scheme_tolerance_

double DualPorosity::scheme_tolerance_

protected

Dual porosity computational scheme tolerance.

According to this tolerance the analytical solution of dual porosity concentrations or simple forward difference approximation of concentrations is chosen for computation.

Definition at line 143 of file dual_porosity.hh.

The documentation for this class was generated from the following files:

/opt/flow123d/flow123d/src/reaction/dual_porosity.hh
/opt/flow123d/flow123d/src/reaction/dual_porosity.cc

Classes

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Static Private Attributes

Detailed Description

Member Typedef Documentation

◆ FactoryBaseType

Constructor & Destructor Documentation

◆ DualPorosity() [1/2]

◆ ~DualPorosity()

◆ DualPorosity() [2/2]

Member Function Documentation

◆ compute_reaction()

◆ get_input_type()

◆ initialize()

◆ initialize_fields()

◆ make_reactions()

◆ output_data()

◆ set_initial_condition()

◆ update_solution()

◆ zero_time_step()

Member Data Documentation

◆ data_

◆ input_data_set_

◆ reaction_immobile

◆ reaction_mobile

◆ registrar

◆ scheme_tolerance_