21 #ifndef PATCH_FE_VALUES_HH_
22 #define PATCH_FE_VALUES_HH_
51 template <
class ValueType>
71 template <
class ValueType>
96 template <
class ValueType>
115 unsigned int begin,
unsigned int begin_side,
unsigned int n_dofs_bulk,
unsigned int n_dofs_side,
unsigned int join_idx)
175 template<
unsigned int dim>
184 template<
unsigned int FE_dim>
187 if (fe_sys !=
nullptr) {
188 return fe_sys->
fe()[component_idx];
190 ASSERT_EQ(component_idx, 0).warning(
"Non-zero component_idx can only be used for FESystem.");
202 template<
unsigned int FE_dim>
206 arma::mat shape_values(fe->n_dofs(), fe->n_components());
207 for (
unsigned int i=0; i<q->
size(); i++)
209 for (
unsigned int j=0; j<fe->n_dofs(); j++)
211 for (
unsigned int c=0; c<fe->n_components(); c++)
212 shape_values(j,c) = fe->shape_value(j, q->
point<FE_dim>(i), c);
214 ref_shape_vals[i][j] = trans(shape_values.row(j));
218 return ref_shape_vals;
229 template<
unsigned int FE_dim>
233 arma::mat shape_values(fe->n_dofs(), fe->n_components());
235 for (
unsigned int sid=0; sid<FE_dim+1; sid++) {
237 for (
unsigned int i=0; i<quad.size(); i++)
239 for (
unsigned int j=0; j<fe->n_dofs(); j++)
241 for (
unsigned int c=0; c<fe->n_components(); c++) {
242 shape_values(j,c) = fe->shape_value(j, quad.template point<FE_dim>(i), c);
245 ref_shape_vals[sid][i][j] = trans(shape_values.row(j));
250 return ref_shape_vals;
255 template<
unsigned int dim>
303 auto fe_component = this->
fe_comp(
fe_, component_idx);
304 ASSERT_EQ(fe_component->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of scalar_shape accessor must be FEScalar!\n");
310 for (
unsigned int j = 0; j < fe_component->n_dofs(); j++) {
311 shape_values[i][j] = ref_shape_vals[i][j][0];
318 uint begin = scalar_shape_bulk_op.result_row();
337 auto fe_component = this->
fe_comp(
fe_, component_idx);
338 ASSERT_EQ(fe_component->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of grad_scalar_shape accessor must be FEScalar!\n");
344 bulk_reinit::ptop_scalar_shape_grads<dim>(operations, op_results, ref_shape_grads, scalar_shape_grads_op_idx);
347 uint begin = grad_scalar_shape_bulk_op.result_row();
368 for (
unsigned int i_pt=0; i_pt<q->
size(); i_pt++)
370 for (
unsigned int i_dof=0; i_dof<fe->n_dofs(); i_dof++)
373 for (
unsigned int c=0; c<fe->n_components(); c++)
374 grad.col(c) += fe->shape_grad(i_dof, q->
point<dim>(i_pt), c);
376 ref_shape_grads[i_pt][i_dof] = grad;
380 return ref_shape_grads;
384 std::shared_ptr< FiniteElement<dim> >
fe_;
388 template<
unsigned int dim>
434 auto fe_component = this->
fe_comp(
fe_, component_idx);
435 ASSERT_EQ(fe_component->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of scalar_shape accessor must be FEScalar!\n");
443 for (
unsigned int s=0; s<dim+1; ++s)
445 for (
unsigned int j = 0; j < fe_component->n_dofs(); j++) {
446 shape_values[s][i][j] = ref_shape_vals[s][i][j][0];
453 uint begin = scalar_shape_bulk_op.result_row();
461 auto fe_component = this->
fe_comp(
fe_, component_idx);
462 ASSERT_EQ(fe_component->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of grad_scalar_shape accessor must be FEScalar!\n");
468 side_reinit::ptop_scalar_shape_grads<dim>(operations, op_results, el_table, ref_shape_grads, scalar_shape_grads_op_idx);
471 uint begin = grad_scalar_shape_side_op.result_row();
490 for (
unsigned int sid=0; sid<dim+1; sid++) {
492 for (
unsigned int i_pt=0; i_pt<quad.size(); i_pt++)
494 for (
unsigned int i_dof=0; i_dof<fe->n_dofs(); i_dof++)
497 for (
unsigned int c=0; c<fe->n_components(); c++)
498 grad.col(c) += fe->shape_grad(i_dof, quad.template point<dim>(i_pt), c);
500 ref_shape_grads[sid][i_pt][i_dof] = grad;
505 return ref_shape_grads;
509 std::shared_ptr< FiniteElement<dim> >
fe_;
513 template<
unsigned int dim>
530 ASSERT_EQ(fe_component_low->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of scalar_shape accessor must be FEScalar!\n");
535 for (
unsigned int j = 0; j < fe_component_low->n_dofs(); j++) {
536 shape_values_bulk[i][j] = ref_shape_vals_bulk[i][j][0];
543 uint begin_bulk = grad_scalar_shape_bulk_op.result_row();
547 ASSERT_EQ(fe_component_high->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of scalar_shape accessor must be FEScalar!\n");
554 for (
unsigned int s=0; s<dim+1; ++s)
556 for (
unsigned int j = 0; j < fe_component_high->n_dofs(); j++) {
557 shape_values_side[s][i][j] = ref_shape_vals_side[s][i][j][0];
564 uint begin_side = grad_scalar_shape_side_op.result_row();
567 begin_bulk, begin_side, fe_component_low->n_dofs(), fe_component_high->n_dofs(), 0) );
568 unsigned int end_idx = fe_component_low->n_dofs() + fe_component_high->n_dofs();
570 begin_bulk, begin_side, fe_component_low->n_dofs(), fe_component_high->n_dofs(), end_idx) );
599 template<
unsigned int spacedim = 3>
646 used_quads_[0] =
false; used_quads_[1] =
false;
650 : asm_arena_(1024 * 1024, 256),
651 patch_arena_(1024 * 1024, 256),
660 used_quads_[0] =
false; used_quads_[1] =
false;
670 if (is_bulk)
return patch_point_vals_bulk_[dim-1].get_quadrature();
671 else return patch_point_vals_side_[dim-1].get_quadrature();
681 template<
unsigned int DIM>
684 if ( _quadrature.
dim() == DIM ) {
685 used_quads_[0] =
true;
686 patch_point_vals_bulk_[DIM-1].initialize(3);
688 used_quads_[1] =
true;
689 patch_point_vals_side_[DIM-1].initialize(4);
696 for (
unsigned int i=0; i<3; ++i) {
697 if (used_quads_[0]) patch_point_vals_bulk_[i].reset();
698 if (used_quads_[1]) patch_point_vals_side_[i].reset();
705 for (
unsigned int i=0; i<3; ++i) {
706 if (used_quads_[0]) patch_point_vals_bulk_[i].reinit_patch();
707 if (used_quads_[1]) patch_point_vals_side_[i].reinit_patch();
714 template<
unsigned int dim>
716 ASSERT((dim>=0) && (dim<=3))(dim).error(
"Dimension must be 0, 1, 2 or 3.");
721 template<
unsigned int dim>
723 ASSERT((dim>0) && (dim<=3))(dim).error(
"Dimension must be 1, 2 or 3.");
728 template<
unsigned int dim>
730 ASSERT((dim>0) && (dim<=3))(dim).error(
"Dimension must be 1, 2 or 3.");
735 template<
unsigned int dim>
738 return JoinValues<dim>(&patch_point_vals_bulk_[dim-2], &patch_point_vals_side_[dim-1], fe_);
745 for (
uint i=0; i<3; ++i) {
746 if (used_quads_[0]) patch_point_vals_bulk_[i].resize_tables(table_sizes.
elem_sizes_[0][i], table_sizes.
point_sizes_[0][i]);
747 if (used_quads_[1]) patch_point_vals_side_[i].resize_tables(table_sizes.
elem_sizes_[1][i], table_sizes.
point_sizes_[1][i]);
754 switch (cell.
dim()) {
757 return patch_point_vals_bulk_[0].register_element(coords, element_patch_idx);
761 return patch_point_vals_bulk_[1].register_element(coords, element_patch_idx);
765 return patch_point_vals_bulk_[2].register_element(coords, element_patch_idx);
777 for (
unsigned int n=0; n<cell_side.
dim(); n++)
778 for (
unsigned int c=0; c<spacedim; c++)
779 side_coords(c,n) = (*cell_side.
side().
node(n))[c];
783 switch (cell.
dim()) {
786 return patch_point_vals_side_[0].register_side(elm_coords, side_coords);
790 return patch_point_vals_side_[1].register_side(elm_coords, side_coords);
794 return patch_point_vals_side_[2].register_side(elm_coords, side_coords);
805 return patch_point_vals_bulk_[cell.
dim()-1].register_bulk_point(elem_table_row, value_patch_idx, cell.
elm_idx());
810 return patch_point_vals_side_[cell_side.
dim()-1].register_side_point(elem_table_row, value_patch_idx, cell_side.
elem_idx(), cell_side.
side_idx());
815 stream << endl <<
"Table of patch FE data:" << endl;
816 for (
uint i=0; i<3; ++i) {
817 stream << std::setfill(
'-') << setw(100) <<
"" << endl;
818 stream <<
"Bulk, dimension " << (i+1) << endl;
819 patch_point_vals_bulk_[i].print_data_tables(stream, points, ints);
822 for (
uint i=0; i<3; ++i) {
823 stream << std::setfill(
'-') << setw(100) <<
"" << endl;
824 stream <<
"Side, dimension " << (i+1) << endl;
825 patch_point_vals_side_[i].print_data_tables(stream, points, ints);
827 stream << std::setfill(
'=') << setw(100) <<
"" << endl;
832 stream << endl <<
"Table of patch FE operations:" << endl;
833 for (
uint i=0; i<3; ++i) {
834 stream << std::setfill(
'-') << setw(100) <<
"" << endl;
835 stream <<
"Bulk, dimension " << (i+1) <<
", n_rows " << patch_point_vals_bulk_[i].n_rows() << endl;
836 patch_point_vals_bulk_[i].print_operations(stream, 0);
838 for (
uint i=0; i<3; ++i) {
839 stream << std::setfill(
'-') << setw(100) <<
"" << endl;
840 stream <<
"Side, dimension " << (i+1) <<
", n_rows " << patch_point_vals_side_[i].n_rows() << endl;
841 patch_point_vals_side_[i].print_operations(stream, 1);
843 stream << std::setfill(
'=') << setw(100) <<
"" << endl;
855 template <
class ValueType>
857 template <
class ValueType>
859 template <
class ValueType>
864 template <
class ValueType>
867 return patch_point_vals_.scalar_val(
begin_, value_cache_idx);
873 return patch_point_vals_.vector_val(
begin_, value_cache_idx);
879 return patch_point_vals_.tensor_val(
begin_, value_cache_idx);
882 template <
class ValueType>
885 return patch_point_vals_.scalar_val(
begin_, value_cache_idx);
891 return patch_point_vals_.vector_val(
begin_, value_cache_idx);
897 return patch_point_vals_.tensor_val(
begin_, value_cache_idx);
900 template <
class ValueType>
903 return patch_point_vals_.scalar_val(
begin_+shape_idx, value_cache_idx);
909 return patch_point_vals_.vector_val(
begin_+3*shape_idx, value_cache_idx);
914 Tensor tens; tens.zeros();
918 template <
class ValueType>
921 return patch_point_vals_.scalar_val(
begin_+shape_idx, value_cache_idx);
927 return patch_point_vals_.vector_val(
begin_+3*shape_idx, value_cache_idx);
932 Tensor tens; tens.zeros();
937 template <
class ValueType>
949 Vector vect; vect.zeros();
955 Tensor tens; tens.zeros();
959 template <
class ValueType>
971 Vector vect; vect.zeros();
977 Tensor tens; tens.zeros();
#define ASSERT_EQ(a, b)
Definition of comparative assert macro (EQual) only for debug mode.
std::vector< std::vector< std::vector< arma::vec > > > ref_shape_values_side(Quadrature *q, std::shared_ptr< FiniteElement< FE_dim >> fe)
Precomputed values of basis functions at the side quadrature points.
std::shared_ptr< FiniteElement< FE_dim > > fe_comp(std::shared_ptr< FiniteElement< FE_dim > > fe, uint component_idx)
Return FiniteElement of component_idx for FESystem or fe for other types.
std::vector< std::vector< arma::vec > > ref_shape_values_bulk(Quadrature *q, std::shared_ptr< FiniteElement< FE_dim >> fe)
Precomputed values of basis functions at the bulk quadrature points.
Base point accessor class.
const ElementCacheMap * elm_cache_map() const
unsigned int elem_patch_idx() const
unsigned int eval_point_idx() const
Return index in EvalPoints object.
ElQ< Scalar > JxW()
Register the product of Jacobian determinant and the quadrature weight at bulk quadrature points.
PatchPointValues< 3 > & patch_point_vals_
ElQ< Vector > coords()
Create bulk accessor of coords entity.
std::vector< std::vector< arma::mat > > ref_shape_gradients(std::shared_ptr< FiniteElement< dim >> fe)
Precomputed gradients of basis functions at the quadrature points.
ElQ< Scalar > determinant()
Create bulk accessor of jac determinant entity.
std::shared_ptr< FiniteElement< dim > > fe_
FeQ< Vector > grad_scalar_shape(uint component_idx=0)
Return the value of the function_no-th gradient shape function at the p bulk quadrature point.
FeQ< Scalar > scalar_shape(uint component_idx=0)
Return the value of the function_no-th shape function at the p bulk quadrature point.
BulkValues(PatchPointValues< 3 > &patch_point_vals, MixedPtr< FiniteElement > fe)
Constructor.
Cell accessor allow iterate over DOF handler cells.
unsigned int dim() const
Return dimension of element appropriate to cell.
unsigned int elm_idx() const
Return serial idx to element of loc_ele_idx_.
ElementAccessor< 3 > elm() const
Return ElementAccessor to element of loc_ele_idx_.
Side accessor allows to iterate over sides of DOF handler cell.
unsigned int elem_idx() const
Side side() const
Return Side of given cell and side_idx.
const DHCellAccessor & cell() const
Return DHCellAccessor appropriate to the side.
unsigned int dim() const
Return dimension of element appropriate to the side.
unsigned int side_idx() const
ElQ()=delete
Forbidden default constructor.
PatchPointValues< 3 > & patch_point_vals_
Reference to PatchPointValues.
ValueType operator()(FMT_UNUSED const SidePoint &point)
ValueType operator()(FMT_UNUSED const BulkPoint &point)
ElQ(PatchPointValues< 3 > &patch_point_vals, unsigned int begin)
Constructor.
int element_eval_point(unsigned int i_elem_in_cache, unsigned int i_eval_point) const
Compound finite element on dim dimensional simplex.
const std::vector< std::shared_ptr< FiniteElement< dim > > > & fe() const
Bulk data specialization, order of item in operations_ vector corresponds to the BulkOps enum.
unsigned int begin_
Index of the first component of the Quantity. Size is given by ValueType.
PatchPointValues< 3 > & patch_point_vals_
Reference to PatchPointValues.
unsigned int n_dofs_
Number of DOFs.
ValueType operator()(FMT_UNUSED unsigned int shape_idx, FMT_UNUSED const BulkPoint &point)
FeQ(PatchPointValues< 3 > &patch_point_vals, unsigned int begin, unsigned int n_dofs)
FeQ()=delete
Forbidden default constructor.
ValueType operator()(FMT_UNUSED unsigned int shape_idx, FMT_UNUSED const SidePoint &point)
Bulk Side specialization, order of item in operations_ vector corresponds to the SideOps enum.
Abstract class for the description of a general finite element on a reference simplex in dim dimensio...
unsigned int n_dofs_both() const
unsigned int begin_side_
Index of the first component of the side Quantity. Size is given by ValueType.
unsigned int local_idx() const
Return local index of DOF (on low / high-dim) - should be private method.
bool operator==(const JoinShapeAccessor< ValueType > &other) const
Comparison of accessors.
unsigned int begin_
Index of the first component of the bulk Quantity. Size is given by ValueType.
PatchPointValues< 3 > * patch_point_vals_bulk_
Pointer to bulk PatchPointValues.
JoinShapeAccessor(PatchPointValues< 3 > *patch_point_vals_bulk, PatchPointValues< 3 > *patch_point_vals_side, unsigned int begin, unsigned int begin_side, unsigned int n_dofs_bulk, unsigned int n_dofs_side, unsigned int join_idx)
unsigned int n_dofs_high() const
JoinShapeAccessor()
Default constructor.
void inc()
Iterates to next item.
unsigned int join_idx_
Index of processed DOF.
unsigned int n_dofs_high_
Number of DOFs on high-dim element.
unsigned int join_idx() const
Return global index of DOF.
unsigned int n_dofs_low() const
ValueType operator()(const BulkPoint &point)
unsigned int n_dofs_low_
Number of DOFs on low-dim element.
PatchPointValues< 3 > * patch_point_vals_side_
Pointer to side PatchPointValues.
JoinValues(FMT_UNUSED PatchPointValues< 3 > *patch_point_vals_bulk, FMT_UNUSED PatchPointValues< 3 > *patch_point_vals_side, FMT_UNUSED MixedPtr< FiniteElement > fe)
Constructor.
Range< JoinShapeAccessor< Scalar > > scalar_join_shape(FMT_UNUSED uint component_idx=0)
std::shared_ptr< FiniteElement< dim > > fe_high_dim_
JoinValues(PatchPointValues< 3 > *patch_point_vals_bulk, PatchPointValues< 3 > *patch_point_vals_side, MixedPtr< FiniteElement > fe)
Constructor.
PatchPointValues< 3 > * patch_point_vals_bulk_
Range< JoinShapeAccessor< Scalar > > scalar_join_shape(uint component_idx=0)
std::shared_ptr< FiniteElement< dim-1 > > fe_low_dim_
PatchPointValues< 3 > * patch_point_vals_side_
static ElementMap element_map(ElementAccessor< 3 > elm)
uint register_element(DHCellAccessor cell, uint element_patch_idx)
Register element to patch_point_vals_ table by dimension of element.
~PatchFEValues()
Destructor.
std::array< FeBulk::PatchPointValues< spacedim >, 3 > patch_point_vals_bulk_
Sub objects of bulk data of dimensions 1,2,3.
uint register_bulk_point(DHCellAccessor cell, uint elem_table_row, uint value_patch_idx)
Register bulk point to patch_point_vals_ table by dimension of element.
uint register_side(DHCellSide cell_side)
Register side to patch_point_vals_ table by dimension of side.
void print_data_tables(ostream &stream, bool points, bool ints, bool only_bulk=true) const
Temporary development method.
JoinValues< dim > join_values()
Return JoinValue object of dimension given by template parameter.
Quadrature * get_quadrature(uint dim, bool is_bulk) const
Return bulk or side quadrature of given dimension.
BulkValues< dim > bulk_values()
Return BulkValue object of dimension given by template parameter.
void initialize(Quadrature &_quadrature)
Initialize structures and calculates cell-independent data.
void print_operations(ostream &stream) const
Temporary development method.
std::array< FeSide::PatchPointValues< spacedim >, 3 > patch_point_vals_side_
Sub objects of side data of dimensions 1,2,3.
MixedPtr< FiniteElement > fe_
Mixed of shared pointers of FiniteElement object.
SideValues< dim > side_values()
Return SideValue object of dimension given by template parameter.
AssemblyArena patch_arena_
void resize_tables(TableSizes table_sizes)
Resize tables of patch_point_vals_.
PatchFEValues(unsigned int quad_order, MixedPtr< FiniteElement > fe)
void reinit_patch()
Reinit data.
unsigned int n_dofs() const
Returns the number of shape functions.
uint register_side_point(DHCellSide cell_side, uint elem_table_row, uint value_patch_idx)
Register side point to patch_point_vals_ table by dimension of side.
void reset()
Reset PatchpointValues structures.
ElOp< spacedim > & make_fe_op(std::initializer_list< uint > shape, ReinitFunction reinit_f, std::vector< uint > input_ops_vec, uint n_dofs, OpSizeType size_type=pointOp)
std::vector< ElOp< spacedim > > operations_
Vector of all defined operations.
Quadrature * get_quadrature() const
Getter for quadrature.
uint dim() const
Getter for dim_.
Scalar scalar_val(uint result_row, uint point_idx) const
Base class for quadrature rules on simplices in arbitrary dimensions.
Quadrature make_from_side(unsigned int sid) const
unsigned int size() const
Returns number of quadrature points.
Armor::ArmaVec< double, point_dim > point(unsigned int i) const
Returns the ith quadrature point.
General point a+ side_begin_ + ccessor allow iterate over quadrature points of given side defined in ...
unsigned int eval_point_idx() const
Return index in EvalPoints object.
SideValues(PatchPointValues< 3 > &patch_point_vals, MixedPtr< FiniteElement > fe)
Constructor.
ElQ< Vector > normal_vector()
Register the normal vector to a side at side quadrature points.
std::shared_ptr< FiniteElement< dim > > fe_
ElQ< Scalar > JxW()
Same as BulkValues::JxW but register at side quadrature points.
ElQ< Vector > coords()
Create side accessor of coords entity.
FeQ< Scalar > scalar_shape(uint component_idx=0)
Same as BulkValues::scalar_shape but register at side quadrature points.
FeQ< Vector > grad_scalar_shape(uint component_idx=0)
Same as BulkValues::grad_scalar_shape but register at side quadrature points.
std::vector< std::vector< std::vector< arma::mat > > > ref_shape_gradients(std::shared_ptr< FiniteElement< dim >> fe)
Precomputed gradients of basis functions at the quadrature points.
PatchPointValues< 3 > & patch_point_vals_
ElQ< Scalar > determinant()
Create bulk accessor of jac determinant entity.
NodeAccessor< 3 > node(unsigned int i) const
Returns node for given local index i on the side.
Class ElementValues calculates data related to transformation of reference cell to actual cell (Jacob...
Class FESystem for compound finite elements.
Class FEValues calculates finite element data on the actual cells such as shape function values,...
Iter< Object > make_iter(Object obj)
Class MappingP1 implements the affine transformation of the unit cell onto the actual cell.
ArmaMat< double, N, M > mat
@ opCoords
operations evaluated on quadrature points
@ opInvJac
inverse Jacobian
@ opJxW
JxW value of quadrature point.
@ opNormalVec
normal vector of quadrature point
std::vector< std::array< uint, 3 > > DimPointTable
Holds triplet (dim; bulk/side; idx of point in subtable)
Store finite element data on the actual patch such as shape function values, gradients,...
Definitions of particular quadrature rules on simplices.
Class RefElement defines numbering of vertices, sides, calculation of normal vectors etc.
Struct for pre-computing number of elements, sides, bulk points and side points on each dimension.
std::vector< std::vector< uint > > point_sizes_
void reset()
Set all values to zero.
std::vector< std::vector< uint > > elem_sizes_
static void ptop_scalar_shape(std::vector< ElOp< 3 >> &operations, TableDbl &op_results, std::vector< std::vector< double > > shape_values, uint scalar_shape_op_idx)
static void ptop_scalar_shape(std::vector< ElOp< 3 >> &operations, TableDbl &op_results, TableInt &el_table, std::vector< std::vector< std::vector< double > > > shape_values, uint scalar_shape_op_idx)
Enum type UpdateFlags indicates which quantities are to be recomputed on each finite element cell.