Flow123d
DF_patch_fe_mechanics-c13f069
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Provides the numbering of the finite element degrees of freedom on the computational mesh. More...
#include <dofhandler.hh>
Public Member Functions | |
DOFHandlerMultiDim (MeshBase &_mesh, bool make_elem_part=true) | |
Constructor. More... | |
void | distribute_dofs (std::shared_ptr< DiscreteSpace > ds) |
Distributes degrees of freedom on the mesh needed for the given discrete space. More... | |
std::shared_ptr< DOFHandlerMultiDim > | sequential () |
Returns sequential version of the current dof handler. More... | |
std::shared_ptr< VecScatter > | sequential_scatter () |
Returns scatter context from parallel to sequential vectors. More... | |
virtual VectorMPI | create_vector () |
Allocates PETSc vector according to the dof distribution. More... | |
LongIdx | edge_index (int loc_edg) const |
Returns the global index of local edge. More... | |
LongIdx | nb_index (int loc_nb) const |
Returns the global index of local neighbour. More... | |
unsigned int | n_loc_edges () const |
Returns number of local edges. More... | |
unsigned int | n_loc_nb () const |
Returns number of local neighbours. More... | |
void | print () const |
Output structure of dof handler. More... | |
std::size_t | hash () const override |
Range< DHCellAccessor > | own_range () const |
Returns range of DOF handler cells (only range of own without ghost cells) More... | |
Range< DHCellAccessor > | local_range () const |
Returns range over own and ghost cells of DOF handler. More... | |
Range< DHCellAccessor > | ghost_range () const |
Returns range over ghosts DOF handler cells. More... | |
unsigned int | n_own_cells () const |
Return size of own range (number of own cells) More... | |
unsigned int | n_local_cells () const |
Return size of local range (number of local cells) More... | |
unsigned int | n_ghost_cells () const |
Return size of ghost range (number of ghost cells) More... | |
const DHCellAccessor | cell_accessor_from_element (unsigned int elm_idx) const |
Return DHCellAccessor appropriate to ElementAccessor of given idx. More... | |
std::shared_ptr< DiscreteSpace > | ds () const |
Return pointer to discrete space for which the handler distributes dofs. More... | |
const std::vector< LongIdx > & | get_local_to_global_map () const |
Get the map between local dof indices and the global ones. More... | |
~DOFHandlerMultiDim () override | |
Destructor. More... | |
Public Member Functions inherited from DOFHandlerBase | |
DOFHandlerBase (MeshBase &_mesh) | |
Constructor. More... | |
unsigned int | n_global_dofs () const |
Getter for the number of all mesh dofs required by the given finite element. More... | |
unsigned int | lsize () const |
Returns the number of dofs on the current process. More... | |
unsigned int | max_elem_dofs () const |
Returns max. number of dofs on one element. More... | |
std::shared_ptr< Distribution > | distr () const |
MeshBase * | mesh () const |
Returns the mesh. More... | |
virtual | ~DOFHandlerBase () |
Destructor. More... | |
Protected Member Functions | |
bool | el_is_local (int index) const |
void | make_elem_partitioning () |
Prepare parallel distribution of elements, edges and neighbours. More... | |
void | init_cell_starts () |
Initialize vector of starting indices for elements. More... | |
void | init_dof_starts (std::vector< LongIdx > &node_dof_starts, std::vector< LongIdx > &edge_dof_starts) |
Initialize auxiliary vector of starting indices of nodal/edge dofs. More... | |
void | init_status (std::vector< short int > &node_status, std::vector< short int > &edge_status) |
Initialize node_status and edge_status. More... | |
void | receive_ghost_dofs (unsigned int proc, std::vector< LongIdx > &dofs) |
Obtain dof numbers on ghost elements from other processor. More... | |
void | send_ghost_dofs (unsigned int proc) |
Send dof numbers to other processor. More... | |
void | update_local_dofs (unsigned int proc, const std::vector< bool > &update_cells, const std::vector< LongIdx > &dofs, const std::vector< LongIdx > &node_dof_starts, std::vector< LongIdx > &node_dofs, const std::vector< LongIdx > &edge_dof_starts, std::vector< LongIdx > &edge_dofs) |
Update dofs on local elements from ghost element dofs. More... | |
void | create_sequential () |
Communicate local dof indices to all processors and create new sequential dof handler. More... | |
unsigned int | get_dof_indices (const DHCellAccessor &cell, std::vector< LongIdx > &indices) const override |
Returns the global indices of dofs associated to the cell . More... | |
LocDofVec | get_loc_dof_indices (unsigned int loc_ele_idx) const override |
Returns the indices of dofs associated to the cell on the local process. More... | |
Protected Attributes | |
std::shared_ptr< DiscreteSpace > | ds_ |
Pointer to the discrete space for which the handler distributes dofs. More... | |
bool | is_parallel_ |
Indicator for parallel/sequential dof handler. More... | |
std::shared_ptr< DOFHandlerMultiDim > | dh_seq_ |
Sequential dof handler associated to the current (parallel) one. More... | |
std::shared_ptr< VecScatter > | scatter_to_seq_ |
Scatter context for parallel to sequential vectors. More... | |
std::vector< LongIdx > | cell_starts |
Starting indices for local (owned+ghost) element dofs. More... | |
std::vector< IntIdx > | dof_indices |
Dof numbers on local and ghost elements. More... | |
std::vector< LongIdx > | local_to_global_dof_idx_ |
Maps local and ghost dof indices to global ones. More... | |
std::unordered_map< LongIdx, LongIdx > | global_to_local_el_idx_ |
Maps global element index into local/ghost index (obsolete). More... | |
Distribution * | el_ds_ |
Distribution of elements. More... | |
vector< LongIdx > | edg_4_loc |
Local edge index -> global edge index. More... | |
vector< LongIdx > | nb_4_loc |
Local neighbour index -> global neighbour index. More... | |
vector< LongIdx > | ghost_4_loc |
Indices of ghost cells (neighbouring with local elements). More... | |
set< unsigned int > | ghost_proc |
Processors of ghost elements. More... | |
map< unsigned int, vector< LongIdx > > | ghost_proc_el |
Arrays of ghost cells for each neighbouring processor. More... | |
bool | distribute_edge_dofs |
Temporary flag which prevents using dof handler on meshes where edges are not allocated (currently BCMesh). More... | |
Protected Attributes inherited from DOFHandlerBase | |
unsigned int | n_global_dofs_ |
Number of global dofs assigned by the handler. More... | |
unsigned int | lsize_ |
Number of dofs associated to local process. More... | |
unsigned int | loffset_ |
Index of the first dof on the local process. More... | |
unsigned int | max_elem_dofs_ |
Max. number of dofs per element. More... | |
MeshBase * | mesh_ |
Pointer to the mesh to which the dof handler is associated. More... | |
std::shared_ptr< Distribution > | dof_ds_ |
Distribution of dofs associated to local process. More... | |
Static Protected Attributes | |
static const int | INVALID_NFACE = 1 |
static const int | VALID_NFACE = 2 |
static const int | ASSIGNED_NFACE = 3 |
static const int | INVALID_DOF = -1 |
Private Member Functions | |
void | print_cell_dofs (stringstream &s, DHCellAccessor cell) const |
Auxiliary function for output of information about dofs in a cell. More... | |
Friends | |
class | DHCellAccessor |
class | DHCellSide |
class | DHNeighbSide |
class | SubDOFHandlerMultiDim |
Provides the numbering of the finite element degrees of freedom on the computational mesh.
Class DOFHandlerMultiDim distributes the degrees of freedom (dof) for a particular triplet of 1d, 2d and 3d finite elements on the computational mesh and provides mappings between local and global dofs. The template parameter dim
denotes the spatial dimension of the reference finite element.
Currently the functionality is restricted to finite elements with internal and nodal dofs, i.e. the neighboring elements can share only dofs on nodes.
Definition at line 151 of file dofhandler.hh.
DOFHandlerMultiDim::DOFHandlerMultiDim | ( | MeshBase & | _mesh, |
bool | make_elem_part = true |
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Constructor.
_mesh | The mesh. |
make_elem_part | Allow switch off make_element_partitioning, necessary for boundary DOF handler. |
Definition at line 49 of file dofhandler.cc.
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override |
Destructor.
Definition at line 579 of file dofhandler.cc.
const DHCellAccessor DOFHandlerMultiDim::cell_accessor_from_element | ( | unsigned int | elm_idx | ) | const |
Return DHCellAccessor appropriate to ElementAccessor of given idx.
Definition at line 701 of file dofhandler.cc.
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Communicate local dof indices to all processors and create new sequential dof handler.
Collective on all processors.
Definition at line 464 of file dofhandler.cc.
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Allocates PETSc vector according to the dof distribution.
Definition at line 553 of file dofhandler.cc.
void DOFHandlerMultiDim::distribute_dofs | ( | std::shared_ptr< DiscreteSpace > | ds | ) |
Distributes degrees of freedom on the mesh needed for the given discrete space.
By default, the dof handler is parallel, meaning that each processor has access to dofs on the local elements and on one layer of ghost elements (owned by neighbouring elements). This can be changed by setting sequential
to true.
ds | The discrete space consisting of finite elements for each mesh element. |
sequential | If true then each processor will have information about all dofs. |
Definition at line 324 of file dofhandler.cc.
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Return pointer to discrete space for which the handler distributes dofs.
Definition at line 255 of file dofhandler.hh.
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Returns the global index of local edge.
loc_edg | Local index of edge. |
Definition at line 200 of file dofhandler.hh.
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Returns true if element is on local process.
index | Global element index. |
Definition at line 669 of file dofhandler.cc.
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Returns the global indices of dofs associated to the cell
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cell | The cell. |
indices | Array of dof indices on the cell. |
Implements DOFHandlerBase.
Definition at line 567 of file dofhandler.cc.
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Returns the indices of dofs associated to the cell
on the local process.
loc_ele_idx | local element index. |
Implements DOFHandlerBase.
Definition at line 369 of file dofhandler.hh.
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inline |
Get the map between local dof indices and the global ones.
Definition at line 258 of file dofhandler.hh.
Range< DHCellAccessor > DOFHandlerMultiDim::ghost_range | ( | ) | const |
Returns range over ghosts DOF handler cells.
Definition at line 694 of file dofhandler.cc.
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Implements DOFHandlerBase::hash
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Implements DOFHandlerBase.
Definition at line 675 of file dofhandler.cc.
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Initialize vector of starting indices for elements.
Definition at line 83 of file dofhandler.cc.
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Initialize auxiliary vector of starting indices of nodal/edge dofs.
node_dof_starts | Vector of nodal starting indices (output). |
edge_dof_starts | Vector of edge starting indices (output). |
Definition at line 97 of file dofhandler.cc.
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Initialize node_status and edge_status.
Set VALID_NFACE for nodes/edges owned by local elements and INVALID_NFACE for nodes/edges owned by ghost elements.
node_status | Vector of nodal status (output). |
edge_status | Vector of edge status (output). |
Definition at line 123 of file dofhandler.cc.
Range< DHCellAccessor > DOFHandlerMultiDim::local_range | ( | ) | const |
Returns range over own and ghost cells of DOF handler.
Definition at line 687 of file dofhandler.cc.
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Prepare parallel distribution of elements, edges and neighbours.
Definition at line 584 of file dofhandler.cc.
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Return size of ghost range (number of ghost cells)
Definition at line 247 of file dofhandler.hh.
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Returns number of local edges.
Definition at line 212 of file dofhandler.hh.
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Returns number of local neighbours.
Definition at line 217 of file dofhandler.hh.
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Return size of local range (number of local cells)
Definition at line 242 of file dofhandler.hh.
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Return size of own range (number of own cells)
Definition at line 237 of file dofhandler.hh.
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Returns the global index of local neighbour.
loc_nb | Local index of neighbour. |
Definition at line 207 of file dofhandler.hh.
Range< DHCellAccessor > DOFHandlerMultiDim::own_range | ( | ) | const |
Returns range of DOF handler cells (only range of own without ghost cells)
Definition at line 680 of file dofhandler.cc.
void DOFHandlerMultiDim::print | ( | ) | const |
Output structure of dof handler.
Definition at line 722 of file dofhandler.cc.
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Auxiliary function for output of information about dofs in a cell.
Definition at line 707 of file dofhandler.cc.
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Obtain dof numbers on ghost elements from other processor.
proc | Neighbouring processor. |
dofs | Array where dofs are stored (output). |
Definition at line 178 of file dofhandler.cc.
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Send dof numbers to other processor.
proc | Neighbouring processor. |
Definition at line 199 of file dofhandler.cc.
std::shared_ptr< DOFHandlerMultiDim > DOFHandlerMultiDim::sequential | ( | ) |
Returns sequential version of the current dof handler.
Collective on all processors.
Definition at line 69 of file dofhandler.cc.
std::shared_ptr< VecScatter > DOFHandlerMultiDim::sequential_scatter | ( | ) |
Returns scatter context from parallel to sequential vectors.
For sequential dof handler it returns null pointer. Collective on all processors.
Definition at line 76 of file dofhandler.cc.
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Update dofs on local elements from ghost element dofs.
proc | Neighbouring processor. |
update_cells | Vector of global indices of elements which need to be updated from ghost elements. |
dofs | Vector of dof indices on ghost elements from processor proc . |
node_dof_starts | Vector of starting indices of nodal dofs. |
node_dofs | Vector of nodal dof indices (output). |
edge_dof_starts | Vector of starting indices of edge dofs. |
edge_dofs | Vector of edge dof indices (output). |
Definition at line 230 of file dofhandler.cc.
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Definition at line 265 of file dofhandler.hh.
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Definition at line 266 of file dofhandler.hh.
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Definition at line 267 of file dofhandler.hh.
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Definition at line 268 of file dofhandler.hh.
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Definition at line 393 of file dofhandler.hh.
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Starting indices for local (owned+ghost) element dofs.
E.g. dof_indices[cell_starts[idx]] = dof number for first dof on the cell with local index idx within the parallel structure. To use with DHCellAccessor use the following:
DHCellAccessor<3> cell; ... // i-th dof number on the cell dof_indices[cell_starts[cell.local_idx()]+i] = ...
For sequential dof handler, dofs from all elements are stored and elements are ordered as in mesh_->get_row_4_el().
Definition at line 424 of file dofhandler.hh.
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Sequential dof handler associated to the current (parallel) one.
Definition at line 404 of file dofhandler.hh.
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Temporary flag which prevents using dof handler on meshes where edges are not allocated (currently BCMesh).
Definition at line 466 of file dofhandler.hh.
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Dof numbers on local and ghost elements.
Dofs are ordered accordingly with cell_starts and local dof order given by the finite element. See cell_starts for more description.
Definition at line 432 of file dofhandler.hh.
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Pointer to the discrete space for which the handler distributes dofs.
Definition at line 398 of file dofhandler.hh.
Local edge index -> global edge index.
Definition at line 451 of file dofhandler.hh.
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Distribution of elements.
Definition at line 448 of file dofhandler.hh.
Indices of ghost cells (neighbouring with local elements).
Definition at line 457 of file dofhandler.hh.
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Processors of ghost elements.
Definition at line 460 of file dofhandler.hh.
Arrays of ghost cells for each neighbouring processor.
Definition at line 463 of file dofhandler.hh.
Maps global element index into local/ghost index (obsolete).
Definition at line 445 of file dofhandler.hh.
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Definition at line 394 of file dofhandler.hh.
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Flags used during distribution of dofs to mark n-face and dof status.
INVALID_NFACE means that on this node/edge/side/cell the current processor will not distribute dofs. VALID_NFACE means that on this node/edge/side/cell the current processor will distribute dofs. ASSIGNED_NFACE means that dofs on this n-face are already distributed.
INVALID_DOF marks dofs whose global number has to be set by neighbouring processor.
Definition at line 391 of file dofhandler.hh.
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Indicator for parallel/sequential dof handler.
Definition at line 401 of file dofhandler.hh.
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Maps local and ghost dof indices to global ones.
First lsize_ entries correspond to dofs owned by local processor, the remaining entries are ghost dofs sorted by neighbouring processor id.
Definition at line 440 of file dofhandler.hh.
Local neighbour index -> global neighbour index.
Definition at line 454 of file dofhandler.hh.
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Scatter context for parallel to sequential vectors.
Definition at line 407 of file dofhandler.hh.
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Definition at line 392 of file dofhandler.hh.