21 #ifndef PATCH_FE_VALUES_HH_
22 #define PATCH_FE_VALUES_HH_
52 template <
class ValueType>
73 template <
class ValueType>
98 template <
class ValueType>
117 unsigned int begin,
unsigned int begin_side,
unsigned int n_dofs_bulk,
unsigned int n_dofs_side,
unsigned int join_idx)
177 template<
unsigned int dim>
186 template<
unsigned int FE_dim>
189 if (fe_sys !=
nullptr) {
190 return fe_sys->
fe()[component_idx];
192 ASSERT_EQ(component_idx, 0).warning(
"Non-zero component_idx can only be used for FESystem.");
204 template<
unsigned int FE_dim>
208 arma::mat shape_values(fe->n_dofs(), fe->n_components());
209 for (
unsigned int i=0; i<q->
size(); i++)
211 for (
unsigned int j=0; j<fe->n_dofs(); j++)
213 for (
unsigned int c=0; c<fe->n_components(); c++)
214 shape_values(j,c) = fe->shape_value(j, q->
point<FE_dim>(i), c);
216 ref_shape_vals[i][j] = trans(shape_values.row(j));
220 return ref_shape_vals;
231 template<
unsigned int FE_dim>
235 arma::mat shape_values(fe->n_dofs(), fe->n_components());
237 for (
unsigned int sid=0; sid<FE_dim+1; sid++) {
239 for (
unsigned int i=0; i<quad.size(); i++)
241 for (
unsigned int j=0; j<fe->n_dofs(); j++)
243 for (
unsigned int c=0; c<fe->n_components(); c++) {
244 shape_values(j,c) = fe->shape_value(j, quad.template point<FE_dim>(i), c);
247 ref_shape_vals[sid][i][j] = trans(shape_values.row(j));
252 return ref_shape_vals;
257 template<
unsigned int dim>
305 auto fe_component = this->
fe_comp(
fe_, component_idx);
306 ASSERT_EQ(fe_component->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of scalar_shape accessor must be FEScalar!\n");
312 for (
unsigned int j = 0; j < fe_component->n_dofs(); j++) {
313 shape_values[j][i] = ref_shape_vals[i][j][0];
321 uint begin = scalar_shape_bulk_op.result_row();
340 auto fe_component = this->
fe_comp(
fe_, component_idx);
341 ASSERT_EQ(fe_component->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of grad_scalar_shape accessor must be FEScalar!\n");
347 bulk_reinit::ptop_scalar_shape_grads<dim>(operations, op_results, ref_shape_grads, scalar_shape_grads_op_idx);
350 uint begin = grad_scalar_shape_bulk_op.result_row();
371 for (
unsigned int i_pt=0; i_pt<q->
size(); i_pt++)
373 for (
unsigned int i_dof=0; i_dof<fe->n_dofs(); i_dof++)
376 for (
unsigned int c=0; c<fe->n_components(); c++)
377 grad.col(c) += fe->shape_grad(i_dof, q->
point<dim>(i_pt), c);
379 ref_shape_grads[i_pt][i_dof] = grad;
383 return ref_shape_grads;
387 std::shared_ptr< FiniteElement<dim> >
fe_;
391 template<
unsigned int dim>
437 auto fe_component = this->
fe_comp(
fe_, component_idx);
438 ASSERT_EQ(fe_component->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of scalar_shape accessor must be FEScalar!\n");
446 for (
unsigned int s=0; s<dim+1; ++s)
448 for (
unsigned int j = 0; j < fe_component->n_dofs(); j++) {
449 shape_values[s][i][j] = ref_shape_vals[s][i][j][0];
456 uint begin = scalar_shape_bulk_op.result_row();
464 auto fe_component = this->
fe_comp(
fe_, component_idx);
465 ASSERT_EQ(fe_component->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of grad_scalar_shape accessor must be FEScalar!\n");
471 side_reinit::ptop_scalar_shape_grads<dim>(operations, op_results, el_table, ref_shape_grads, scalar_shape_grads_op_idx);
474 uint begin = grad_scalar_shape_side_op.result_row();
493 for (
unsigned int sid=0; sid<dim+1; sid++) {
495 for (
unsigned int i_pt=0; i_pt<quad.size(); i_pt++)
497 for (
unsigned int i_dof=0; i_dof<fe->n_dofs(); i_dof++)
500 for (
unsigned int c=0; c<fe->n_components(); c++)
501 grad.col(c) += fe->shape_grad(i_dof, quad.template point<dim>(i_pt), c);
503 ref_shape_grads[sid][i_pt][i_dof] = grad;
508 return ref_shape_grads;
512 std::shared_ptr< FiniteElement<dim> >
fe_;
516 template<
unsigned int dim>
533 ASSERT_EQ(fe_component_low->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of scalar_shape accessor must be FEScalar!\n");
538 for (
unsigned int j = 0; j < fe_component_low->n_dofs(); j++) {
539 shape_values_bulk[i][j] = ref_shape_vals_bulk[i][j][0];
546 uint begin_bulk = grad_scalar_shape_bulk_op.result_row();
550 ASSERT_EQ(fe_component_high->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of scalar_shape accessor must be FEScalar!\n");
557 for (
unsigned int s=0; s<dim+1; ++s)
559 for (
unsigned int j = 0; j < fe_component_high->n_dofs(); j++) {
560 shape_values_side[s][i][j] = ref_shape_vals_side[s][i][j][0];
567 uint begin_side = grad_scalar_shape_side_op.result_row();
570 begin_bulk, begin_side, fe_component_low->n_dofs(), fe_component_high->n_dofs(), 0) );
571 unsigned int end_idx = fe_component_low->n_dofs() + fe_component_high->n_dofs();
573 begin_bulk, begin_side, fe_component_low->n_dofs(), fe_component_high->n_dofs(), end_idx) );
602 template<
unsigned int spacedim = 3>
649 used_quads_[0] =
false; used_quads_[1] =
false;
653 : asm_arena_(1024 * 1024, 256),
654 patch_arena_(nullptr),
663 used_quads_[0] =
false; used_quads_[1] =
false;
670 if (patch_arena_!=
nullptr)
676 if (is_bulk)
return patch_point_vals_bulk_[dim-1].get_quadrature();
677 else return patch_point_vals_side_[dim-1].get_quadrature();
687 template<
unsigned int DIM>
690 if ( _quadrature.
dim() == DIM ) {
691 used_quads_[0] =
true;
692 patch_point_vals_bulk_[DIM-1].initialize(3);
694 used_quads_[1] =
true;
695 patch_point_vals_side_[DIM-1].initialize(4);
701 patch_arena_ = asm_arena_.get_child_arena();
702 for (
unsigned int i=0; i<3; ++i) {
703 if (used_quads_[0]) patch_point_vals_bulk_[i].init_finalize(patch_arena_);
704 if (used_quads_[1]) patch_point_vals_side_[i].init_finalize(patch_arena_);
711 for (
unsigned int i=0; i<3; ++i) {
712 if (used_quads_[0]) patch_point_vals_bulk_[i].reset();
713 if (used_quads_[1]) patch_point_vals_side_[i].reset();
715 patch_arena_->reset();
721 for (
unsigned int i=0; i<3; ++i) {
722 if (used_quads_[0]) patch_point_vals_bulk_[i].reinit_patch();
723 if (used_quads_[1]) patch_point_vals_side_[i].reinit_patch();
730 template<
unsigned int dim>
732 ASSERT((dim>=0) && (dim<=3))(dim).error(
"Dimension must be 0, 1, 2 or 3.");
737 template<
unsigned int dim>
739 ASSERT((dim>0) && (dim<=3))(dim).error(
"Dimension must be 1, 2 or 3.");
744 template<
unsigned int dim>
746 ASSERT((dim>0) && (dim<=3))(dim).error(
"Dimension must be 1, 2 or 3.");
751 template<
unsigned int dim>
754 return JoinValues<dim>(&patch_point_vals_bulk_[dim-2], &patch_point_vals_side_[dim-1], fe_);
761 for (
uint i=0; i<3; ++i) {
762 if (used_quads_[0]) patch_point_vals_bulk_[i].resize_tables(table_sizes.
elem_sizes_[0][i], table_sizes.
point_sizes_[0][i]);
763 if (used_quads_[1]) patch_point_vals_side_[i].resize_tables(table_sizes.
elem_sizes_[1][i], table_sizes.
point_sizes_[1][i]);
770 switch (cell.
dim()) {
773 return patch_point_vals_bulk_[0].register_element(coords, element_patch_idx);
777 return patch_point_vals_bulk_[1].register_element(coords, element_patch_idx);
781 return patch_point_vals_bulk_[2].register_element(coords, element_patch_idx);
793 for (
unsigned int n=0; n<cell_side.
dim(); n++)
794 for (
unsigned int c=0; c<spacedim; c++)
795 side_coords(c,n) = (*cell_side.
side().
node(n))[c];
799 switch (cell.
dim()) {
802 return patch_point_vals_side_[0].register_side(elm_coords, side_coords);
806 return patch_point_vals_side_[1].register_side(elm_coords, side_coords);
810 return patch_point_vals_side_[2].register_side(elm_coords, side_coords);
821 return patch_point_vals_bulk_[cell.
dim()-1].register_bulk_point(elem_table_row, value_patch_idx, cell.
elm_idx());
826 return patch_point_vals_side_[cell_side.
dim()-1].register_side_point(elem_table_row, value_patch_idx, cell_side.
elem_idx(), cell_side.
side_idx());
831 stream << endl <<
"Table of patch FE data:" << endl;
832 for (
uint i=0; i<3; ++i) {
833 stream << std::setfill(
'-') << setw(100) <<
"" << endl;
834 stream <<
"Bulk, dimension " << (i+1) << endl;
835 patch_point_vals_bulk_[i].print_data_tables(stream, points, ints);
838 for (
uint i=0; i<3; ++i) {
839 stream << std::setfill(
'-') << setw(100) <<
"" << endl;
840 stream <<
"Side, dimension " << (i+1) << endl;
841 patch_point_vals_side_[i].print_data_tables(stream, points, ints);
843 stream << std::setfill(
'=') << setw(100) <<
"" << endl;
848 stream << endl <<
"Table of patch FE operations:" << endl;
849 for (
uint i=0; i<3; ++i) {
850 stream << std::setfill(
'-') << setw(100) <<
"" << endl;
851 stream <<
"Bulk, dimension " << (i+1) <<
", n_rows " << patch_point_vals_bulk_[i].n_rows() << endl;
852 patch_point_vals_bulk_[i].print_operations(stream, 0);
854 for (
uint i=0; i<3; ++i) {
855 stream << std::setfill(
'-') << setw(100) <<
"" << endl;
856 stream <<
"Side, dimension " << (i+1) <<
", n_rows " << patch_point_vals_side_[i].n_rows() << endl;
857 patch_point_vals_side_[i].print_operations(stream, 1);
859 stream << std::setfill(
'=') << setw(100) <<
"" << endl;
871 template <
class ValueType>
873 template <
class ValueType>
875 template <
class ValueType>
880 template <
class ValueType>
883 return patch_point_vals_.scalar_value(op_idx_, value_cache_idx);
889 return patch_point_vals_.vector_value(op_idx_, value_cache_idx);
895 return patch_point_vals_.tensor_value(op_idx_, value_cache_idx);
898 template <
class ValueType>
901 return patch_point_vals_.scalar_val(
begin_, value_cache_idx);
907 return patch_point_vals_.vector_val(
begin_, value_cache_idx);
913 return patch_point_vals_.tensor_val(
begin_, value_cache_idx);
916 template <
class ValueType>
919 return patch_point_vals_.scalar_val(
begin_+shape_idx, value_cache_idx);
925 return patch_point_vals_.vector_val(
begin_+3*shape_idx, value_cache_idx);
930 Tensor tens; tens.zeros();
934 template <
class ValueType>
937 return patch_point_vals_.scalar_val(
begin_+shape_idx, value_cache_idx);
943 return patch_point_vals_.vector_val(
begin_+3*shape_idx, value_cache_idx);
948 Tensor tens; tens.zeros();
953 template <
class ValueType>
965 Vector vect; vect.zeros();
971 Tensor tens; tens.zeros();
975 template <
class ValueType>
987 Vector vect; vect.zeros();
993 Tensor tens; tens.zeros();
#define ASSERT_EQ(a, b)
Definition of comparative assert macro (EQual) only for debug mode.
std::vector< std::vector< std::vector< arma::vec > > > ref_shape_values_side(Quadrature *q, std::shared_ptr< FiniteElement< FE_dim >> fe)
Precomputed values of basis functions at the side quadrature points.
std::shared_ptr< FiniteElement< FE_dim > > fe_comp(std::shared_ptr< FiniteElement< FE_dim > > fe, uint component_idx)
Return FiniteElement of component_idx for FESystem or fe for other types.
std::vector< std::vector< arma::vec > > ref_shape_values_bulk(Quadrature *q, std::shared_ptr< FiniteElement< FE_dim >> fe)
Precomputed values of basis functions at the bulk quadrature points.
Base point accessor class.
const ElementCacheMap * elm_cache_map() const
unsigned int elem_patch_idx() const
unsigned int eval_point_idx() const
Return index in EvalPoints object.
ElQ< Scalar > JxW()
Register the product of Jacobian determinant and the quadrature weight at bulk quadrature points.
PatchPointValues< 3 > & patch_point_vals_
ElQ< Vector > coords()
Create bulk accessor of coords entity.
std::vector< std::vector< arma::mat > > ref_shape_gradients(std::shared_ptr< FiniteElement< dim >> fe)
Precomputed gradients of basis functions at the quadrature points.
ElQ< Scalar > determinant()
Create bulk accessor of jac determinant entity.
std::shared_ptr< FiniteElement< dim > > fe_
FeQ< Vector > grad_scalar_shape(uint component_idx=0)
Return the value of the function_no-th gradient shape function at the p bulk quadrature point.
FeQ< Scalar > scalar_shape(uint component_idx=0)
Return the value of the function_no-th shape function at the p bulk quadrature point.
BulkValues(PatchPointValues< 3 > &patch_point_vals, MixedPtr< FiniteElement > fe)
Constructor.
Cell accessor allow iterate over DOF handler cells.
unsigned int dim() const
Return dimension of element appropriate to cell.
unsigned int elm_idx() const
Return serial idx to element of loc_ele_idx_.
ElementAccessor< 3 > elm() const
Return ElementAccessor to element of loc_ele_idx_.
Side accessor allows to iterate over sides of DOF handler cell.
unsigned int elem_idx() const
Side side() const
Return Side of given cell and side_idx.
const DHCellAccessor & cell() const
Return DHCellAccessor appropriate to the side.
unsigned int dim() const
Return dimension of element appropriate to the side.
unsigned int side_idx() const
ElQ(PatchPointValues< 3 > &patch_point_vals, unsigned int begin, unsigned int op_idx)
Constructor.
unsigned int op_idx_
Index of the first component of the bulk Quantity. Size is given by ValueType.
ElQ()=delete
Forbidden default constructor.
PatchPointValues< 3 > & patch_point_vals_
Reference to PatchPointValues.
ValueType operator()(FMT_UNUSED const SidePoint &point)
ValueType operator()(FMT_UNUSED const BulkPoint &point)
int element_eval_point(unsigned int i_elem_in_cache, unsigned int i_eval_point) const
Compound finite element on dim dimensional simplex.
const std::vector< std::shared_ptr< FiniteElement< dim > > > & fe() const
Bulk data specialization, order of item in operations_ vector corresponds to the BulkOps enum.
unsigned int begin_
Index of the first component of the Quantity. Size is given by ValueType.
PatchPointValues< 3 > & patch_point_vals_
Reference to PatchPointValues.
unsigned int n_dofs_
Number of DOFs.
ValueType operator()(FMT_UNUSED unsigned int shape_idx, FMT_UNUSED const BulkPoint &point)
FeQ(PatchPointValues< 3 > &patch_point_vals, unsigned int begin, unsigned int n_dofs)
FeQ()=delete
Forbidden default constructor.
ValueType operator()(FMT_UNUSED unsigned int shape_idx, FMT_UNUSED const SidePoint &point)
Bulk Side specialization, order of item in operations_ vector corresponds to the SideOps enum.
Abstract class for the description of a general finite element on a reference simplex in dim dimensio...
unsigned int n_dofs_both() const
unsigned int begin_side_
Index of the first component of the side Quantity. Size is given by ValueType.
unsigned int local_idx() const
Return local index of DOF (on low / high-dim) - should be private method.
bool operator==(const JoinShapeAccessor< ValueType > &other) const
Comparison of accessors.
unsigned int begin_
Index of the first component of the bulk Quantity. Size is given by ValueType.
PatchPointValues< 3 > * patch_point_vals_bulk_
Pointer to bulk PatchPointValues.
JoinShapeAccessor(PatchPointValues< 3 > *patch_point_vals_bulk, PatchPointValues< 3 > *patch_point_vals_side, unsigned int begin, unsigned int begin_side, unsigned int n_dofs_bulk, unsigned int n_dofs_side, unsigned int join_idx)
unsigned int n_dofs_high() const
JoinShapeAccessor()
Default constructor.
void inc()
Iterates to next item.
unsigned int join_idx_
Index of processed DOF.
unsigned int n_dofs_high_
Number of DOFs on high-dim element.
unsigned int join_idx() const
Return global index of DOF.
unsigned int n_dofs_low() const
ValueType operator()(const BulkPoint &point)
unsigned int n_dofs_low_
Number of DOFs on low-dim element.
PatchPointValues< 3 > * patch_point_vals_side_
Pointer to side PatchPointValues.
JoinValues(FMT_UNUSED PatchPointValues< 3 > *patch_point_vals_bulk, FMT_UNUSED PatchPointValues< 3 > *patch_point_vals_side, FMT_UNUSED MixedPtr< FiniteElement > fe)
Constructor.
Range< JoinShapeAccessor< Scalar > > scalar_join_shape(FMT_UNUSED uint component_idx=0)
std::shared_ptr< FiniteElement< dim > > fe_high_dim_
JoinValues(PatchPointValues< 3 > *patch_point_vals_bulk, PatchPointValues< 3 > *patch_point_vals_side, MixedPtr< FiniteElement > fe)
Constructor.
PatchPointValues< 3 > * patch_point_vals_bulk_
Range< JoinShapeAccessor< Scalar > > scalar_join_shape(uint component_idx=0)
std::shared_ptr< FiniteElement< dim-1 > > fe_low_dim_
PatchPointValues< 3 > * patch_point_vals_side_
static ElementMap element_map(ElementAccessor< 3 > elm)
uint register_element(DHCellAccessor cell, uint element_patch_idx)
Register element to patch_point_vals_ table by dimension of element.
~PatchFEValues()
Destructor.
std::array< FeBulk::PatchPointValues< spacedim >, 3 > patch_point_vals_bulk_
Sub objects of bulk data of dimensions 1,2,3.
uint register_bulk_point(DHCellAccessor cell, uint elem_table_row, uint value_patch_idx)
Register bulk point to patch_point_vals_ table by dimension of element.
uint register_side(DHCellSide cell_side)
Register side to patch_point_vals_ table by dimension of side.
void init_finalize()
Finalize initialization, creates child (patch) arena and passes it to PatchPointValue objects.
void print_data_tables(ostream &stream, bool points, bool ints, bool only_bulk=true) const
Temporary development method.
JoinValues< dim > join_values()
Return JoinValue object of dimension given by template parameter.
Quadrature * get_quadrature(uint dim, bool is_bulk) const
Return bulk or side quadrature of given dimension.
AssemblyArena * patch_arena_
BulkValues< dim > bulk_values()
Return BulkValue object of dimension given by template parameter.
void initialize(Quadrature &_quadrature)
Initialize structures and calculates cell-independent data.
void print_operations(ostream &stream) const
Temporary development method.
std::array< FeSide::PatchPointValues< spacedim >, 3 > patch_point_vals_side_
Sub objects of side data of dimensions 1,2,3.
MixedPtr< FiniteElement > fe_
Mixed of shared pointers of FiniteElement object.
SideValues< dim > side_values()
Return SideValue object of dimension given by template parameter.
void resize_tables(TableSizes table_sizes)
Resize tables of patch_point_vals_.
PatchFEValues(unsigned int quad_order, MixedPtr< FiniteElement > fe)
void reinit_patch()
Reinit data.
unsigned int n_dofs() const
Returns the number of shape functions.
uint register_side_point(DHCellSide cell_side, uint elem_table_row, uint value_patch_idx)
Register side point to patch_point_vals_ table by dimension of side.
void reset()
Reset PatchpointValues structures.
ElOp< spacedim > & make_fe_op(std::initializer_list< uint > shape, ReinitFunction reinit_f, std::vector< uint > input_ops_vec, uint n_dofs, OpSizeType size_type=pointOp)
std::vector< ElOp< spacedim > > operations_
Vector of all defined operations.
Quadrature * get_quadrature() const
Getter for quadrature.
uint dim() const
Getter for dim_.
Scalar scalar_val(uint result_row, uint point_idx) const
Base class for quadrature rules on simplices in arbitrary dimensions.
Quadrature make_from_side(unsigned int sid) const
unsigned int size() const
Returns number of quadrature points.
Armor::ArmaVec< double, point_dim > point(unsigned int i) const
Returns the ith quadrature point.
General point a+ side_begin_ + ccessor allow iterate over quadrature points of given side defined in ...
unsigned int eval_point_idx() const
Return index in EvalPoints object.
SideValues(PatchPointValues< 3 > &patch_point_vals, MixedPtr< FiniteElement > fe)
Constructor.
ElQ< Vector > normal_vector()
Register the normal vector to a side at side quadrature points.
std::shared_ptr< FiniteElement< dim > > fe_
ElQ< Scalar > JxW()
Same as BulkValues::JxW but register at side quadrature points.
ElQ< Vector > coords()
Create side accessor of coords entity.
FeQ< Scalar > scalar_shape(uint component_idx=0)
Same as BulkValues::scalar_shape but register at side quadrature points.
FeQ< Vector > grad_scalar_shape(uint component_idx=0)
Same as BulkValues::grad_scalar_shape but register at side quadrature points.
std::vector< std::vector< std::vector< arma::mat > > > ref_shape_gradients(std::shared_ptr< FiniteElement< dim >> fe)
Precomputed gradients of basis functions at the quadrature points.
PatchPointValues< 3 > & patch_point_vals_
ElQ< Scalar > determinant()
Create bulk accessor of jac determinant entity.
NodeAccessor< 3 > node(unsigned int i) const
Returns node for given local index i on the side.
Class ElementValues calculates data related to transformation of reference cell to actual cell (Jacob...
Class FESystem for compound finite elements.
Class FEValues calculates finite element data on the actual cells such as shape function values,...
Iter< Object > make_iter(Object obj)
Class MappingP1 implements the affine transformation of the unit cell onto the actual cell.
ArmaMat< double, N, M > mat
@ opCoords
operations evaluated on quadrature points
@ opInvJac
inverse Jacobian
@ opJxW
JxW value of quadrature point.
@ opNormalVec
normal vector of quadrature point
std::vector< std::array< uint, 3 > > DimPointTable
Holds triplet (dim; bulk/side; idx of point in subtable)
Store finite element data on the actual patch such as shape function values, gradients,...
Definitions of particular quadrature rules on simplices.
Class RefElement defines numbering of vertices, sides, calculation of normal vectors etc.
Struct for pre-computing number of elements, sides, bulk points and side points on each dimension.
std::vector< std::vector< uint > > point_sizes_
void reset()
Set all values to zero.
std::vector< std::vector< uint > > elem_sizes_
static void ptop_scalar_shape(std::vector< ElOp< 3 >> &operations, std::vector< std::vector< double > > shape_values, uint scalar_shape_op_idx)
static void ptop_scalar_shape(std::vector< ElOp< 3 >> &operations, TableDbl &op_results, TableInt &el_table, std::vector< std::vector< std::vector< double > > > shape_values, uint scalar_shape_op_idx)
Enum type UpdateFlags indicates which quantities are to be recomputed on each finite element cell.