21 #ifndef PATCH_FE_VALUES_HH_
22 #define PATCH_FE_VALUES_HH_
52 template <
class ValueType>
73 template <
class ValueType>
99 template <
class ValueType>
118 unsigned int begin,
unsigned int begin_side,
unsigned int n_dofs_bulk,
unsigned int n_dofs_side,
unsigned int join_idx)
178 template<
unsigned int dim>
187 template<
unsigned int FE_dim>
190 if (fe_sys !=
nullptr) {
191 return fe_sys->
fe()[component_idx];
193 ASSERT_EQ(component_idx, 0).warning(
"Non-zero component_idx can only be used for FESystem.");
205 template<
unsigned int FE_dim>
209 arma::mat shape_values(fe->n_dofs(), fe->n_components());
210 for (
unsigned int i=0; i<q->
size(); i++)
212 for (
unsigned int j=0; j<fe->n_dofs(); j++)
214 for (
unsigned int c=0; c<fe->n_components(); c++)
215 shape_values(j,c) = fe->shape_value(j, q->
point<FE_dim>(i), c);
217 ref_shape_vals[i][j] = trans(shape_values.row(j));
221 return ref_shape_vals;
232 template<
unsigned int FE_dim>
236 arma::mat shape_values(fe->n_dofs(), fe->n_components());
238 for (
unsigned int sid=0; sid<FE_dim+1; sid++) {
240 for (
unsigned int i=0; i<quad.size(); i++)
242 for (
unsigned int j=0; j<fe->n_dofs(); j++)
244 for (
unsigned int c=0; c<fe->n_components(); c++) {
245 shape_values(j,c) = fe->shape_value(j, quad.template point<FE_dim>(i), c);
248 ref_shape_vals[sid][i][j] = trans(shape_values.row(j));
253 return ref_shape_vals;
258 template<
unsigned int dim>
306 auto fe_component = this->
fe_comp(
fe_, component_idx);
307 ASSERT_EQ(fe_component->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of scalar_shape accessor must be FEScalar!\n");
313 for (
unsigned int j = 0; j < fe_component->n_dofs(); j++) {
314 shape_values[j][i] = ref_shape_vals[i][j][0];
322 uint begin = scalar_shape_bulk_op.result_row();
342 auto fe_component = this->
fe_comp(
fe_, component_idx);
343 ASSERT_EQ(fe_component->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of grad_scalar_shape accessor must be FEScalar!\n");
349 bulk_reinit::ptop_scalar_shape_grads<dim>(operations, ref_shape_grads, scalar_shape_grads_op_idx);
352 uint begin = grad_scalar_shape_bulk_op.result_row();
374 for (
unsigned int i_pt=0; i_pt<q->
size(); i_pt++)
376 for (
unsigned int i_dof=0; i_dof<fe->n_dofs(); i_dof++)
379 for (
unsigned int c=0; c<fe->n_components(); c++)
380 grad.col(c) += fe->shape_grad(i_dof, q->
point<dim>(i_pt), c);
382 ref_shape_grads[i_pt][i_dof] = grad;
386 return ref_shape_grads;
390 std::shared_ptr< FiniteElement<dim> >
fe_;
394 template<
unsigned int dim>
440 auto fe_component = this->
fe_comp(
fe_, component_idx);
441 ASSERT_EQ(fe_component->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of scalar_shape accessor must be FEScalar!\n");
449 for (
unsigned int s=0; s<dim+1; ++s)
451 for (
unsigned int j = 0; j < fe_component->n_dofs(); j++) {
452 shape_values[s][i][j] = ref_shape_vals[s][i][j][0];
459 uint begin = scalar_shape_bulk_op.result_row();
468 auto fe_component = this->
fe_comp(
fe_, component_idx);
469 ASSERT_EQ(fe_component->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of grad_scalar_shape accessor must be FEScalar!\n");
475 side_reinit::ptop_scalar_shape_grads<dim>(operations, op_results, el_table, ref_shape_grads, scalar_shape_grads_op_idx);
478 uint begin = grad_scalar_shape_side_op.result_row();
498 for (
unsigned int sid=0; sid<dim+1; sid++) {
500 for (
unsigned int i_pt=0; i_pt<quad.size(); i_pt++)
502 for (
unsigned int i_dof=0; i_dof<fe->n_dofs(); i_dof++)
505 for (
unsigned int c=0; c<fe->n_components(); c++)
506 grad.col(c) += fe->shape_grad(i_dof, quad.template point<dim>(i_pt), c);
508 ref_shape_grads[sid][i_pt][i_dof] = grad;
513 return ref_shape_grads;
517 std::shared_ptr< FiniteElement<dim> >
fe_;
521 template<
unsigned int dim>
538 ASSERT_EQ(fe_component_low->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of scalar_shape accessor must be FEScalar!\n");
543 for (
unsigned int j = 0; j < fe_component_low->n_dofs(); j++) {
544 shape_values_bulk[i][j] = ref_shape_vals_bulk[i][j][0];
551 uint begin_bulk = grad_scalar_shape_bulk_op.result_row();
555 ASSERT_EQ(fe_component_high->fe_type(),
FEType::FEScalar).error(
"Type of FiniteElement of scalar_shape accessor must be FEScalar!\n");
562 for (
unsigned int s=0; s<dim+1; ++s)
564 for (
unsigned int j = 0; j < fe_component_high->n_dofs(); j++) {
565 shape_values_side[s][i][j] = ref_shape_vals_side[s][i][j][0];
572 uint begin_side = grad_scalar_shape_side_op.result_row();
575 begin_bulk, begin_side, fe_component_low->n_dofs(), fe_component_high->n_dofs(), 0) );
576 unsigned int end_idx = fe_component_low->n_dofs() + fe_component_high->n_dofs();
578 begin_bulk, begin_side, fe_component_low->n_dofs(), fe_component_high->n_dofs(), end_idx) );
607 template<
unsigned int spacedim = 3>
654 used_quads_[0] =
false; used_quads_[1] =
false;
658 : asm_arena_(1024 * 1024, 256),
659 patch_arena_(nullptr),
668 used_quads_[0] =
false; used_quads_[1] =
false;
675 if (patch_arena_!=
nullptr)
681 if (is_bulk)
return patch_point_vals_bulk_[dim-1].get_quadrature();
682 else return patch_point_vals_side_[dim-1].get_quadrature();
692 template<
unsigned int DIM>
695 if ( _quadrature.
dim() == DIM ) {
696 used_quads_[0] =
true;
697 patch_point_vals_bulk_[DIM-1].initialize(3);
699 used_quads_[1] =
true;
700 patch_point_vals_side_[DIM-1].initialize(4);
706 patch_arena_ = asm_arena_.get_child_arena();
707 for (
unsigned int i=0; i<3; ++i) {
708 if (used_quads_[0]) patch_point_vals_bulk_[i].init_finalize(patch_arena_);
709 if (used_quads_[1]) patch_point_vals_side_[i].init_finalize(patch_arena_);
716 for (
unsigned int i=0; i<3; ++i) {
717 if (used_quads_[0]) patch_point_vals_bulk_[i].reset();
718 if (used_quads_[1]) patch_point_vals_side_[i].reset();
720 patch_arena_->reset();
726 for (
unsigned int i=0; i<3; ++i) {
727 if (used_quads_[0]) patch_point_vals_bulk_[i].reinit_patch();
728 if (used_quads_[1]) patch_point_vals_side_[i].reinit_patch();
735 template<
unsigned int dim>
737 ASSERT((dim>=0) && (dim<=3))(dim).error(
"Dimension must be 0, 1, 2 or 3.");
742 template<
unsigned int dim>
744 ASSERT((dim>0) && (dim<=3))(dim).error(
"Dimension must be 1, 2 or 3.");
749 template<
unsigned int dim>
751 ASSERT((dim>0) && (dim<=3))(dim).error(
"Dimension must be 1, 2 or 3.");
756 template<
unsigned int dim>
759 return JoinValues<dim>(&patch_point_vals_bulk_[dim-2], &patch_point_vals_side_[dim-1], fe_);
766 for (
uint i=0; i<3; ++i) {
767 if (used_quads_[0]) patch_point_vals_bulk_[i].resize_tables(table_sizes.
elem_sizes_[0][i], table_sizes.
point_sizes_[0][i]);
768 if (used_quads_[1]) patch_point_vals_side_[i].resize_tables(table_sizes.
elem_sizes_[1][i], table_sizes.
point_sizes_[1][i]);
775 switch (cell.
dim()) {
778 return patch_point_vals_bulk_[0].register_element(coords, element_patch_idx);
782 return patch_point_vals_bulk_[1].register_element(coords, element_patch_idx);
786 return patch_point_vals_bulk_[2].register_element(coords, element_patch_idx);
798 for (
unsigned int n=0; n<cell_side.
dim(); n++)
799 for (
unsigned int c=0; c<spacedim; c++)
800 side_coords(c,n) = (*cell_side.
side().
node(n))[c];
804 switch (cell.
dim()) {
807 return patch_point_vals_side_[0].register_side(elm_coords, side_coords);
811 return patch_point_vals_side_[1].register_side(elm_coords, side_coords);
815 return patch_point_vals_side_[2].register_side(elm_coords, side_coords);
826 return patch_point_vals_bulk_[cell.
dim()-1].register_bulk_point(elem_table_row, value_patch_idx, cell.
elm_idx(), i_point_on_elem);
831 return patch_point_vals_side_[cell_side.
dim()-1].register_side_point(elem_table_row, value_patch_idx, cell_side.
elem_idx(), cell_side.
side_idx());
836 stream << endl <<
"Table of patch FE data:" << endl;
837 for (
uint i=0; i<3; ++i) {
838 stream << std::setfill(
'-') << setw(100) <<
"" << endl;
839 stream <<
"Bulk, dimension " << (i+1) << endl;
840 patch_point_vals_bulk_[i].print_data_tables(stream, points, ints);
843 for (
uint i=0; i<3; ++i) {
844 stream << std::setfill(
'-') << setw(100) <<
"" << endl;
845 stream <<
"Side, dimension " << (i+1) << endl;
846 patch_point_vals_side_[i].print_data_tables(stream, points, ints);
848 stream << std::setfill(
'=') << setw(100) <<
"" << endl;
853 stream << endl <<
"Table of patch FE operations:" << endl;
854 for (
uint i=0; i<3; ++i) {
855 stream << std::setfill(
'-') << setw(100) <<
"" << endl;
856 stream <<
"Bulk, dimension " << (i+1) <<
", n_rows " << patch_point_vals_bulk_[i].n_rows() << endl;
857 patch_point_vals_bulk_[i].print_operations(stream, 0);
859 for (
uint i=0; i<3; ++i) {
860 stream << std::setfill(
'-') << setw(100) <<
"" << endl;
861 stream <<
"Side, dimension " << (i+1) <<
", n_rows " << patch_point_vals_side_[i].n_rows() << endl;
862 patch_point_vals_side_[i].print_operations(stream, 1);
864 stream << std::setfill(
'=') << setw(100) <<
"" << endl;
876 template <
class ValueType>
878 template <
class ValueType>
880 template <
class ValueType>
885 template <
class ValueType>
888 return patch_point_vals_.scalar_value(op_idx_, value_cache_idx);
894 return patch_point_vals_.vector_value(op_idx_, value_cache_idx);
900 return patch_point_vals_.tensor_value(op_idx_, value_cache_idx);
903 template <
class ValueType>
906 return patch_point_vals_.scalar_value(op_idx_, value_cache_idx);
912 return patch_point_vals_.vector_value(op_idx_, value_cache_idx);
918 return patch_point_vals_.tensor_value(op_idx_, value_cache_idx);
921 template <
class ValueType>
924 return patch_point_vals_.scalar_value(op_idx_, value_cache_idx, shape_idx);
930 return patch_point_vals_.vector_value(op_idx_, value_cache_idx, shape_idx);
936 return patch_point_vals_.tensor_value(op_idx_, value_cache_idx, shape_idx);
939 template <
class ValueType>
942 return patch_point_vals_.scalar_value(op_idx_, value_cache_idx, shape_idx);
948 return patch_point_vals_.vector_value(op_idx_, value_cache_idx, shape_idx);
953 unsigned int value_cache_idx = point.elm_cache_map()->element_eval_point(point.elem_patch_idx(), point.eval_point_idx());
954 return patch_point_vals_.tensor_value(op_idx_, value_cache_idx, shape_idx);
958 template <
class ValueType>
970 Vector vect; vect.zeros();
976 Tensor tens; tens.zeros();
980 template <
class ValueType>
992 Vector vect; vect.zeros();
998 Tensor tens; tens.zeros();
#define ASSERT_EQ(a, b)
Definition of comparative assert macro (EQual) only for debug mode.
std::vector< std::vector< std::vector< arma::vec > > > ref_shape_values_side(Quadrature *q, std::shared_ptr< FiniteElement< FE_dim >> fe)
Precomputed values of basis functions at the side quadrature points.
std::shared_ptr< FiniteElement< FE_dim > > fe_comp(std::shared_ptr< FiniteElement< FE_dim > > fe, uint component_idx)
Return FiniteElement of component_idx for FESystem or fe for other types.
std::vector< std::vector< arma::vec > > ref_shape_values_bulk(Quadrature *q, std::shared_ptr< FiniteElement< FE_dim >> fe)
Precomputed values of basis functions at the bulk quadrature points.
Base point accessor class.
const ElementCacheMap * elm_cache_map() const
unsigned int elem_patch_idx() const
unsigned int eval_point_idx() const
Return index in EvalPoints object.
ElQ< Scalar > JxW()
Register the product of Jacobian determinant and the quadrature weight at bulk quadrature points.
PatchPointValues< 3 > & patch_point_vals_
ElQ< Vector > coords()
Create bulk accessor of coords entity.
std::vector< std::vector< arma::mat > > ref_shape_gradients(std::shared_ptr< FiniteElement< dim >> fe)
Precomputed gradients of basis functions at the quadrature points.
ElQ< Scalar > determinant()
Create bulk accessor of jac determinant entity.
std::shared_ptr< FiniteElement< dim > > fe_
FeQ< Vector > grad_scalar_shape(uint component_idx=0)
Return the value of the function_no-th gradient shape function at the p bulk quadrature point.
FeQ< Scalar > scalar_shape(uint component_idx=0)
Return the value of the function_no-th shape function at the p bulk quadrature point.
BulkValues(PatchPointValues< 3 > &patch_point_vals, MixedPtr< FiniteElement > fe)
Constructor.
Cell accessor allow iterate over DOF handler cells.
unsigned int dim() const
Return dimension of element appropriate to cell.
unsigned int elm_idx() const
Return serial idx to element of loc_ele_idx_.
ElementAccessor< 3 > elm() const
Return ElementAccessor to element of loc_ele_idx_.
Side accessor allows to iterate over sides of DOF handler cell.
unsigned int elem_idx() const
Side side() const
Return Side of given cell and side_idx.
const DHCellAccessor & cell() const
Return DHCellAccessor appropriate to the side.
unsigned int dim() const
Return dimension of element appropriate to the side.
unsigned int side_idx() const
ElQ(PatchPointValues< 3 > &patch_point_vals, unsigned int begin, unsigned int op_idx)
Constructor.
unsigned int op_idx_
Index of operation in patch_point_vals_.operations vector.
ElQ()=delete
Forbidden default constructor.
PatchPointValues< 3 > & patch_point_vals_
Reference to PatchPointValues.
unsigned int begin_
Index of the first component of the bulk Quantity. Size is given by ValueType.
ValueType operator()(FMT_UNUSED const SidePoint &point)
ValueType operator()(FMT_UNUSED const BulkPoint &point)
int element_eval_point(unsigned int i_elem_in_cache, unsigned int i_eval_point) const
Compound finite element on dim dimensional simplex.
const std::vector< std::shared_ptr< FiniteElement< dim > > > & fe() const
Bulk data specialization, order of item in operations_ vector corresponds to the BulkOps enum.
unsigned int begin_
Index of the first component of the Quantity. Size is given by ValueType.
PatchPointValues< 3 > & patch_point_vals_
Reference to PatchPointValues.
unsigned int n_dofs_
Number of DOFs.
FeQ(PatchPointValues< 3 > &patch_point_vals, unsigned int begin, unsigned int op_idx, unsigned int n_dofs)
ValueType operator()(FMT_UNUSED unsigned int shape_idx, FMT_UNUSED const BulkPoint &point)
unsigned int op_idx_
Index of operation in patch_point_vals_.operations vector.
FeQ()=delete
Forbidden default constructor.
ValueType operator()(FMT_UNUSED unsigned int shape_idx, FMT_UNUSED const SidePoint &point)
Bulk Side specialization, order of item in operations_ vector corresponds to the SideOps enum.
Abstract class for the description of a general finite element on a reference simplex in dim dimensio...
unsigned int n_dofs_both() const
unsigned int begin_side_
Index of the first component of the side Quantity. Size is given by ValueType.
unsigned int local_idx() const
Return local index of DOF (on low / high-dim) - should be private method.
bool operator==(const JoinShapeAccessor< ValueType > &other) const
Comparison of accessors.
unsigned int begin_
Index of the first component of the bulk Quantity. Size is given by ValueType.
PatchPointValues< 3 > * patch_point_vals_bulk_
Pointer to bulk PatchPointValues.
JoinShapeAccessor(PatchPointValues< 3 > *patch_point_vals_bulk, PatchPointValues< 3 > *patch_point_vals_side, unsigned int begin, unsigned int begin_side, unsigned int n_dofs_bulk, unsigned int n_dofs_side, unsigned int join_idx)
unsigned int n_dofs_high() const
JoinShapeAccessor()
Default constructor.
void inc()
Iterates to next item.
unsigned int join_idx_
Index of processed DOF.
unsigned int n_dofs_high_
Number of DOFs on high-dim element.
unsigned int join_idx() const
Return global index of DOF.
unsigned int n_dofs_low() const
ValueType operator()(const BulkPoint &point)
unsigned int n_dofs_low_
Number of DOFs on low-dim element.
PatchPointValues< 3 > * patch_point_vals_side_
Pointer to side PatchPointValues.
JoinValues(FMT_UNUSED PatchPointValues< 3 > *patch_point_vals_bulk, FMT_UNUSED PatchPointValues< 3 > *patch_point_vals_side, FMT_UNUSED MixedPtr< FiniteElement > fe)
Constructor.
Range< JoinShapeAccessor< Scalar > > scalar_join_shape(FMT_UNUSED uint component_idx=0)
std::shared_ptr< FiniteElement< dim > > fe_high_dim_
JoinValues(PatchPointValues< 3 > *patch_point_vals_bulk, PatchPointValues< 3 > *patch_point_vals_side, MixedPtr< FiniteElement > fe)
Constructor.
PatchPointValues< 3 > * patch_point_vals_bulk_
Range< JoinShapeAccessor< Scalar > > scalar_join_shape(uint component_idx=0)
std::shared_ptr< FiniteElement< dim-1 > > fe_low_dim_
PatchPointValues< 3 > * patch_point_vals_side_
static ElementMap element_map(ElementAccessor< 3 > elm)
uint register_element(DHCellAccessor cell, uint element_patch_idx)
Register element to patch_point_vals_ table by dimension of element.
PatchArena * patch_arena_
uint register_bulk_point(DHCellAccessor cell, uint elem_table_row, uint value_patch_idx, uint i_point_on_elem)
Register bulk point to patch_point_vals_ table by dimension of element.
~PatchFEValues()
Destructor.
std::array< FeBulk::PatchPointValues< spacedim >, 3 > patch_point_vals_bulk_
Sub objects of bulk data of dimensions 1,2,3.
uint register_side(DHCellSide cell_side)
Register side to patch_point_vals_ table by dimension of side.
void init_finalize()
Finalize initialization, creates child (patch) arena and passes it to PatchPointValue objects.
void print_data_tables(ostream &stream, bool points, bool ints, bool only_bulk=true) const
Temporary development method.
JoinValues< dim > join_values()
Return JoinValue object of dimension given by template parameter.
Quadrature * get_quadrature(uint dim, bool is_bulk) const
Return bulk or side quadrature of given dimension.
BulkValues< dim > bulk_values()
Return BulkValue object of dimension given by template parameter.
void initialize(Quadrature &_quadrature)
Initialize structures and calculates cell-independent data.
void print_operations(ostream &stream) const
Temporary development method.
std::array< FeSide::PatchPointValues< spacedim >, 3 > patch_point_vals_side_
Sub objects of side data of dimensions 1,2,3.
MixedPtr< FiniteElement > fe_
Mixed of shared pointers of FiniteElement object.
SideValues< dim > side_values()
Return SideValue object of dimension given by template parameter.
void resize_tables(TableSizes table_sizes)
Resize tables of patch_point_vals_.
PatchFEValues(unsigned int quad_order, MixedPtr< FiniteElement > fe)
void reinit_patch()
Reinit data.
unsigned int n_dofs() const
Returns the number of shape functions.
uint register_side_point(DHCellSide cell_side, uint elem_table_row, uint value_patch_idx)
Register side point to patch_point_vals_ table by dimension of side.
void reset()
Reset PatchpointValues structures.
ElOp< spacedim > & make_fe_op(std::initializer_list< uint > shape, ReinitFunction reinit_f, std::vector< uint > input_ops_vec, uint n_dofs, OpSizeType size_type=pointOp)
std::vector< ElOp< spacedim > > operations_
Vector of all defined operations.
Quadrature * get_quadrature() const
Getter for quadrature.
uint dim() const
Getter for dim_.
Scalar scalar_val(uint result_row, uint point_idx) const
Base class for quadrature rules on simplices in arbitrary dimensions.
Quadrature make_from_side(unsigned int sid) const
unsigned int size() const
Returns number of quadrature points.
Armor::ArmaVec< double, point_dim > point(unsigned int i) const
Returns the ith quadrature point.
General point a+ side_begin_ + ccessor allow iterate over quadrature points of given side defined in ...
unsigned int eval_point_idx() const
Return index in EvalPoints object.
SideValues(PatchPointValues< 3 > &patch_point_vals, MixedPtr< FiniteElement > fe)
Constructor.
ElQ< Vector > normal_vector()
Register the normal vector to a side at side quadrature points.
std::shared_ptr< FiniteElement< dim > > fe_
ElQ< Scalar > JxW()
Same as BulkValues::JxW but register at side quadrature points.
ElQ< Vector > coords()
Create side accessor of coords entity.
FeQ< Scalar > scalar_shape(uint component_idx=0)
Same as BulkValues::scalar_shape but register at side quadrature points.
FeQ< Vector > grad_scalar_shape(uint component_idx=0)
Same as BulkValues::grad_scalar_shape but register at side quadrature points.
std::vector< std::vector< std::vector< arma::mat > > > ref_shape_gradients(std::shared_ptr< FiniteElement< dim >> fe)
Precomputed gradients of basis functions at the quadrature points.
PatchPointValues< 3 > & patch_point_vals_
ElQ< Scalar > determinant()
Create bulk accessor of jac determinant entity.
NodeAccessor< 3 > node(unsigned int i) const
Returns node for given local index i on the side.
Class ElementValues calculates data related to transformation of reference cell to actual cell (Jacob...
Class FESystem for compound finite elements.
Class FEValues calculates finite element data on the actual cells such as shape function values,...
Iter< Object > make_iter(Object obj)
Class MappingP1 implements the affine transformation of the unit cell onto the actual cell.
ArmaMat< double, N, M > mat
@ opCoords
operations evaluated on quadrature points
@ opInvJac
inverse Jacobian
@ opJxW
JxW value of quadrature point.
@ opNormalVec
normal vector of quadrature point
std::vector< std::array< uint, 3 > > DimPointTable
Holds triplet (dim; bulk/side; idx of point in subtable)
Store finite element data on the actual patch such as shape function values, gradients,...
Definitions of particular quadrature rules on simplices.
Class RefElement defines numbering of vertices, sides, calculation of normal vectors etc.
Struct for pre-computing number of elements, sides, bulk points and side points on each dimension.
std::vector< std::vector< uint > > point_sizes_
void reset()
Set all values to zero.
std::vector< std::vector< uint > > elem_sizes_
static void ptop_scalar_shape(std::vector< ElOp< 3 >> &operations, std::vector< std::vector< double > > shape_values, uint scalar_shape_op_idx)
static void ptop_scalar_shape(std::vector< ElOp< 3 >> &operations, TableDbl &op_results, TableInt &el_table, std::vector< std::vector< std::vector< double > > > shape_values, uint scalar_shape_op_idx)
Enum type UpdateFlags indicates which quantities are to be recomputed on each finite element cell.