Mixed-hybrid model of linear Darcy flow, possibly unsteady. More...

#include <darcy_flow_lmh.hh>

Inheritance diagram for DarcyLMH:

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Collaboration diagram for DarcyLMH:

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Classes
class	EqData

class	EqFields

Public Member Functions
	TYPEDEF_ERR_INFO (EI_Reason, string)

	DECLARE_EXCEPTION (ExcSolverDiverge,<< "Diverged nonlinear solver. Reason: "<< EI_Reason::val)

	DECLARE_INPUT_EXCEPTION (ExcMissingTimeGovernor,<< "Missing the key 'time', obligatory for the transient problems.")

	DarcyLMH (Mesh &mesh, const Input::Record in_rec, TimeGovernor *tm=nullptr)
	CREATE AND FILL GLOBAL MH MATRIX OF THE WATER MODEL. More...

void	init_eq_data ()

void	initialize () override

virtual void	initialize_specific ()

void	zero_time_step () override

void	update_solution () override

void	solve_time_step (bool output=true)
	Solve the problem without moving to next time and without output. More...

virtual void	accept_time_step ()
	postprocess velocity field (add sources) More...

virtual void	postprocess ()

virtual void	output_data () override
	Write computed fields. More...

virtual double	solved_time () override

EqFields &	eq_fields ()

EqData &	eq_data ()

void	set_extra_storativity (const Field< 3, FieldValue< 3 >::Scalar > &extra_stor)
	Sets external storarivity field (coupling with other equation). More...

void	set_extra_source (const Field< 3, FieldValue< 3 >::Scalar > &extra_src)
	Sets external source field (coupling with other equation). More...

virtual	~DarcyLMH () override

Public Member Functions inherited from DarcyFlowInterface
	DECLARE_EXCEPTION (ExcBddcmlNotSupported,<< "Flow123d was not build with BDDCML support.\n")

	DECLARE_EXCEPTION (ExcUnknownSolver,<< "Unknown solver type. Internal error.\n")

	DarcyFlowInterface (Mesh &mesh, const Input::Record in_rec)

virtual	~DarcyFlowInterface ()

Public Member Functions inherited from EquationBase
	EquationBase ()

	EquationBase (Mesh &mesh, const Input::Record in_rec)

virtual	~EquationBase ()

virtual void	choose_next_time ()

virtual void	set_time_upper_constraint (double dt, std::string message)

virtual void	set_time_lower_constraint (double dt, std::string message)

TimeGovernor &	time ()

virtual void	set_time_governor (TimeGovernor &time)

double	planned_time ()

Mesh &	mesh ()

std::shared_ptr< Balance >	balance () const

TimeMark::Type	mark_type ()

FieldSet &	eq_fieldset ()

std::shared_ptr< FieldSet >	eq_fieldset_ptr ()

void	init_user_fields (Input::Array user_fields, FieldSet &output_fields)

Static Public Member Functions
static const Input::Type::Selection &	get_mh_mortar_selection ()
	Selection for enum MortarMethod. More...

static const Input::Type::Record &	type_field_descriptor ()

static const Input::Type::Record &	get_input_type ()

Static Public Member Functions inherited from DarcyFlowInterface
static Input::Type::Abstract &	get_input_type ()

Static Public Member Functions inherited from EquationBase
static Input::Type::Record &	record_template ()
	Template Record with common keys for derived equations. More...

static Input::Type::Record &	user_fields_template (std::string equation_name)
	Template Record with common key user_fields for derived equations. More...

Protected Member Functions
virtual bool	zero_time_term (bool time_global=false)

void	solve_nonlinear ()
	Solve method common to zero_time_step and update solution. More...

void	create_linear_system (Input::AbstractRecord rec)

void	allocate_mh_matrix ()

virtual void	assembly_linear_system ()

void	print_matlab_matrix (string matlab_file)
	Print darcy flow matrix in matlab format into a file. More...

std::vector< int >	get_component_indices_vec (unsigned int component) const
	Get vector of all DOF indices of given component (0..side, 1..element, 2..edge) More...

LinSys &	lin_sys_schur ()
	Getter for the linear system of the 2. Schur complement. More...

virtual void	initialize_asm ()
	Create and initialize assembly objects. More...

virtual void	read_init_cond_asm ()
	Call assemble of read_init_cond_assembly_. More...

Protected Attributes
std::shared_ptr< Balance >	balance_

DarcyFlowMHOutput *	output_object

int	size

bool	data_changed_

double	tolerance_

unsigned int	min_n_it_

unsigned int	max_n_it_

std::shared_ptr< EqFields >	eq_fields_

std::shared_ptr< EqData >	eq_data_

GenericAssembly< ReadInitCondAssemblyLMH > *	read_init_cond_assembly_
	general assembly objects, hold assembly objects of appropriate dimension More...

GenericAssemblyBase *	mh_matrix_assembly_

GenericAssemblyBase *	reconstruct_schur_assembly_

Protected Attributes inherited from EquationBase
bool	equation_empty_
	flag is true if only default constructor was called More...

Mesh *	mesh_

TimeGovernor *	time_

Input::Record	input_record_

std::shared_ptr< FieldSet >	eq_fieldset_

std::shared_ptr< Balance >	balance_
	object for calculation and writing the mass balance to file. More...

Static Private Member Functions
static std::string	equation_name ()

Static Private Attributes
static const int	registrar
	Registrar of class to factory. More...

Friends
class	DarcyFlowMHOutput

Additional Inherited Members
Public Types inherited from DarcyFlowInterface
enum	MortarMethod { NoMortar = 0, MortarP0 = 1, MortarP1 = 2 }
	Type of experimental Mortar-like method for non-compatible 1d-2d interaction. More...

typedef DarcyFlowInterface	FactoryBaseType
	Typedef for usage of Input::Factory in child classes. More...

Detailed Description

Mixed-hybrid model of linear Darcy flow, possibly unsteady.

Abstract class for various implementations of Darcy flow. In future there should be one further level of abstraction for general time dependent problem.

maybe TODO: split compute_one_step to : 1) prepare_next_timestep 2) actualize_solution - this is for iterative nonlinear solvers

Mixed-hybrid of steady Darcy flow with sources and variable density.

solve equations:

$q= -{\mathbf{K}} \nabla h -{\mathbf{K}} R \nabla z$

$\mathrm{div} q = f$

where

is flux $[ms^{-1}]$ for 3d, $[m^2s^{-1}]$ for 2d and $[m^3s^{-1}]$ for 1d.
$\mathbf{K}$ is hydraulic tensor ( its orientation for 2d, 1d case is questionable )
$h = \frac{\pi}{\rho_0 g}+z$ is pressure head, $\pi, \rho_0, g$ are the pressure, water density, and acceleration of gravity , respectively. Assumes gravity force acts counter to the direction of the axis.
is destity or gravity variability coefficient. For density driven flow it should be
$R = \frac{\rho}{\rho_0} -1 = \rho_0^{-1}\sum_{i=1}^s c_i$
where is concentration in $kg m^{-3}$ .

The time key is optional, when not specified the equation is forced to steady regime. Using Steady TimeGovernor which have no dt constraints.

TODO: Make solution regular field (need FeSeystem and parallel DofHandler for edge pressures), then remove get_solution_vector from Equation interface. Model for transition coefficients due to Martin, Jaffre, Roberts (see manual for full reference)

TODO:

how we can reuse field values computed during assembly

Definition at line 132 of file darcy_flow_lmh.hh.

Constructor & Destructor Documentation

◆ DarcyLMH()

DarcyLMH::DarcyLMH	(	Mesh &	mesh_in,
		const Input::Record	in_rec,
		TimeGovernor *	tm = `nullptr`
	)

CREATE AND FILL GLOBAL MH MATRIX OF THE WATER MODEL.

Parameters {Solver,NSchurs} number of performed Schur complements (0,1,2) for water flow MH-system

Definition at line 390 of file darcy_flow_lmh.cc.

◆ ~DarcyLMH()

DarcyLMH::~DarcyLMH ( )

overridevirtual

Definition at line 1530 of file darcy_flow_lmh.cc.

Member Function Documentation

◆ accept_time_step()

void DarcyLMH::accept_time_step ( )

virtual

postprocess velocity field (add sources)

Reimplemented in RichardsLMH.

Definition at line 871 of file darcy_flow_lmh.cc.

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◆ allocate_mh_matrix()

void DarcyLMH::allocate_mh_matrix ( )

protected

Read initial condition into solution vector. Must be called after create_linear_system.

For the LMH scheme we have to be able to save edge pressures in order to restart simulation or use results of one simulation as initial condition for other one. In some circumstances, the intial condition must be processed. It is called at the end of read_initial_condition(). This is used in Richards equation due the update of water content. Allocates linear system matrix for MH. TODO:

use general preallocation methods in DofHandler

Definition at line 935 of file darcy_flow_lmh.cc.

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◆ assembly_linear_system()

void DarcyLMH::assembly_linear_system ( )

protectedvirtual

Assembles linear system matrix for MH. Element by element assembly is done using dim-template assembly class. Assembles only steady part of the equation. TODO:

include time term - DONE
add support for Robin type sources
support for nonlinear solvers - assembly either residual vector, matrix, or both (using FADBAD++) Assembly or update whole linear system.

Reimplemented in RichardsLMH.

Definition at line 1251 of file darcy_flow_lmh.cc.

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◆ create_linear_system()

void DarcyLMH::create_linear_system ( Input::AbstractRecord rec )

protected

Create and preallocate MH linear system (including matrix, rhs and solution vectors)

Definition at line 1110 of file darcy_flow_lmh.cc.

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◆ DECLARE_EXCEPTION()

DarcyLMH::DECLARE_EXCEPTION	(	ExcSolverDiverge	,
		<< "Diverged nonlinear solver. Reason: "<< EI_Reason::val
	)

◆ DECLARE_INPUT_EXCEPTION()

DarcyLMH::DECLARE_INPUT_EXCEPTION	(	ExcMissingTimeGovernor	,
		<< "Missing the key 'time'	,
		obligatory for the transient problems."
	)

◆ eq_data()

EqData& DarcyLMH::eq_data ( )

inline

Definition at line 313 of file darcy_flow_lmh.hh.

◆ eq_fields()

EqFields& DarcyLMH::eq_fields ( )

inline

Definition at line 312 of file darcy_flow_lmh.hh.

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◆ equation_name()

static std::string DarcyLMH::equation_name ( )

inlinestaticprivate

Definition at line 437 of file darcy_flow_lmh.hh.

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◆ get_component_indices_vec()

std::vector< int > DarcyLMH::get_component_indices_vec ( unsigned int component ) const

protected

Get vector of all DOF indices of given component (0..side, 1..element, 2..edge)

Definition at line 1566 of file darcy_flow_lmh.cc.

◆ get_input_type()

const it::Record & DarcyLMH::get_input_type ( )

static

Definition at line 104 of file darcy_flow_lmh.cc.

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◆ get_mh_mortar_selection()

const it::Selection & DarcyLMH::get_mh_mortar_selection ( )

static

Selection for enum MortarMethod.

Definition at line 81 of file darcy_flow_lmh.cc.

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◆ init_eq_data()

void DarcyLMH::init_eq_data ( )

Definition at line 463 of file darcy_flow_lmh.cc.

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◆ initialize()

void DarcyLMH::initialize ( )

overridevirtual

This method should initialize fields of the equation. All members (e.g. number of components) that are necessary for the field initialization must be set between construction and call of initialize. After this method the upper level coupling may set sharing of some fields between equations.

Reimplemented from EquationBase.

Definition at line 507 of file darcy_flow_lmh.cc.

◆ initialize_asm()

void DarcyLMH::initialize_asm ( )

protectedvirtual

Create and initialize assembly objects.

Reimplemented in RichardsLMH.

Definition at line 1580 of file darcy_flow_lmh.cc.

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◆ initialize_specific()

void DarcyLMH::initialize_specific ( )

virtual

Reimplemented in RichardsLMH.

Definition at line 616 of file darcy_flow_lmh.cc.

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◆ lin_sys_schur()

LinSys& DarcyLMH::lin_sys_schur ( )

inlineprotected

Getter for the linear system of the 2. Schur complement.

Definition at line 399 of file darcy_flow_lmh.hh.

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◆ output_data()

void DarcyLMH::output_data ( )

overridevirtual

Write computed fields.

Reimplemented from EquationBase.

Definition at line 879 of file darcy_flow_lmh.cc.

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◆ postprocess()

void DarcyLMH::postprocess ( )

virtual

Definition at line 1223 of file darcy_flow_lmh.cc.

◆ print_matlab_matrix()

void DarcyLMH::print_matlab_matrix ( string matlab_file )

protected

Print darcy flow matrix in matlab format into a file.

Return a norm of residual vector. TODO: Introduce Equation::compute_residual() updating residual field, standard part of EqData.

Definition at line 1291 of file darcy_flow_lmh.cc.

◆ read_init_cond_asm()

void DarcyLMH::read_init_cond_asm ( )

protectedvirtual

Call assemble of read_init_cond_assembly_.

Reimplemented in RichardsLMH.

Definition at line 1587 of file darcy_flow_lmh.cc.

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◆ set_extra_source()

void DarcyLMH::set_extra_source ( const Field< 3, FieldValue< 3 >::Scalar > & extra_src )

inline

Sets external source field (coupling with other equation).

Definition at line 320 of file darcy_flow_lmh.hh.

◆ set_extra_storativity()

void DarcyLMH::set_extra_storativity ( const Field< 3, FieldValue< 3 >::Scalar > & extra_stor )

inline

Sets external storarivity field (coupling with other equation).

Definition at line 316 of file darcy_flow_lmh.hh.

◆ solve_nonlinear()

void DarcyLMH::solve_nonlinear ( )

protected

Solve method common to zero_time_step and update solution.

Definition at line 777 of file darcy_flow_lmh.cc.

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◆ solve_time_step()

void DarcyLMH::solve_time_step ( bool output = true )

Solve the problem without moving to next time and without output.

Definition at line 716 of file darcy_flow_lmh.cc.

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◆ solved_time()

double DarcyLMH::solved_time ( )

overridevirtual

Time until which the actual solution is valid. By default, it returns the actual time of the time governor. However, it can be overriden by a specific equation. E.g. it differs in Darcy flow in the steady case.

Reimplemented from EquationBase.

Definition at line 440 of file darcy_flow_lmh.cc.

◆ type_field_descriptor()

const it::Record & DarcyLMH::type_field_descriptor ( )

static

Definition at line 89 of file darcy_flow_lmh.cc.

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◆ TYPEDEF_ERR_INFO()

DarcyLMH::TYPEDEF_ERR_INFO	(	EI_Reason	,
		string
	)

◆ update_solution()

void DarcyLMH::update_solution ( )

overridevirtual

Calculation of the next time step and its output.

Reimplemented from EquationBase.

Definition at line 702 of file darcy_flow_lmh.cc.

◆ zero_time_step()

void DarcyLMH::zero_time_step ( )

overridevirtual

Initialization of the solution in the zero time.

There may be fields that can not be initialized in the initialize method as they are provided by the coupling. Fields coming from coupling has to be set after the initialize method and before zero_time_step.

Reimplemented from EquationBase.

Definition at line 659 of file darcy_flow_lmh.cc.

◆ zero_time_term()

bool DarcyLMH::zero_time_term ( bool time_global = false )

protectedvirtual

Returns true is the fields involved in the time term have values that makes the time term zero. For time_global==true, it returns true if there are no field descriptors in the input list, so the fields )of the time ter) have their default values for whole simulation. If time_global==false (default), only the actual values are considered.

Reimplemented in RichardsLMH.

Definition at line 768 of file darcy_flow_lmh.cc.

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Friends And Related Function Documentation

◆ DarcyFlowMHOutput

friend class DarcyFlowMHOutput

friend

Definition at line 425 of file darcy_flow_lmh.hh.

Member Data Documentation

◆ balance_

std::shared_ptr<Balance> DarcyLMH::balance_

protected

Definition at line 408 of file darcy_flow_lmh.hh.

◆ data_changed_

bool DarcyLMH::data_changed_

protected

Definition at line 414 of file darcy_flow_lmh.hh.

◆ eq_data_

std::shared_ptr<EqData> DarcyLMH::eq_data_

protected

Definition at line 422 of file darcy_flow_lmh.hh.

◆ eq_fields_

std::shared_ptr<EqFields> DarcyLMH::eq_fields_

protected

Definition at line 421 of file darcy_flow_lmh.hh.

◆ max_n_it_

unsigned int DarcyLMH::max_n_it_

protected

Definition at line 419 of file darcy_flow_lmh.hh.

◆ mh_matrix_assembly_

GenericAssemblyBase* DarcyLMH::mh_matrix_assembly_

protected

Definition at line 431 of file darcy_flow_lmh.hh.

◆ min_n_it_

unsigned int DarcyLMH::min_n_it_

protected

Definition at line 418 of file darcy_flow_lmh.hh.

◆ output_object

DarcyFlowMHOutput* DarcyLMH::output_object

protected

Definition at line 410 of file darcy_flow_lmh.hh.

◆ read_init_cond_assembly_

GenericAssembly< ReadInitCondAssemblyLMH >* DarcyLMH::read_init_cond_assembly_

protected

general assembly objects, hold assembly objects of appropriate dimension

Definition at line 430 of file darcy_flow_lmh.hh.

◆ reconstruct_schur_assembly_

GenericAssemblyBase* DarcyLMH::reconstruct_schur_assembly_

protected

Definition at line 432 of file darcy_flow_lmh.hh.

◆ registrar

const int DarcyLMH::registrar

staticprivate

Initial value:

=
        Input::register_class< DarcyLMH, Mesh &, const Input::Record >(equation_name()) +
        DarcyLMH::get_input_type().size()

Registrar of class to factory.

Definition at line 435 of file darcy_flow_lmh.hh.

◆ size

int DarcyLMH::size

protected

Definition at line 412 of file darcy_flow_lmh.hh.

◆ tolerance_

double DarcyLMH::tolerance_

protected

Definition at line 417 of file darcy_flow_lmh.hh.

The documentation for this class was generated from the following files:

/opt/flow123d/flow123d/src/flow/darcy_flow_lmh.hh
/opt/flow123d/flow123d/src/flow/darcy_flow_lmh.cc

Classes

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Static Private Member Functions

Static Private Attributes

Friends

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ DarcyLMH()

◆ ~DarcyLMH()

Member Function Documentation

◆ accept_time_step()

◆ allocate_mh_matrix()

◆ assembly_linear_system()

◆ create_linear_system()

◆ DECLARE_EXCEPTION()

◆ DECLARE_INPUT_EXCEPTION()

◆ eq_data()

◆ eq_fields()

◆ equation_name()

◆ get_component_indices_vec()

◆ get_input_type()

◆ get_mh_mortar_selection()

◆ init_eq_data()

◆ initialize()

◆ initialize_asm()

◆ initialize_specific()

◆ lin_sys_schur()

◆ output_data()

◆ postprocess()

◆ print_matlab_matrix()

◆ read_init_cond_asm()

◆ set_extra_source()

◆ set_extra_storativity()

◆ solve_nonlinear()

◆ solve_time_step()

◆ solved_time()

◆ type_field_descriptor()

◆ TYPEDEF_ERR_INFO()

◆ update_solution()

◆ zero_time_step()

◆ zero_time_term()

Friends And Related Function Documentation

◆ DarcyFlowMHOutput

Member Data Documentation

◆ balance_

◆ data_changed_

◆ eq_data_

◆ eq_fields_

◆ max_n_it_

◆ mh_matrix_assembly_

◆ min_n_it_

◆ output_object

◆ read_init_cond_assembly_

◆ reconstruct_schur_assembly_

◆ registrar

◆ size

◆ tolerance_