Mesh Class Reference

#include <mesh.h>

Inheritance diagram for Mesh:

Collaboration diagram for Mesh:

Classes
struct	ElementTmpData

Public Types
enum	IntersectionSearch { BIHsearch = 1, BIHonly = 2, BBsearch = 3 }
	Types of search algorithm for finding intersection candidates. More...
enum	{ x_coord =0, y_coord =1, z_coord =2 }
typedef enum Mesh::IntersectionSearch	IntersectionSearch
	Types of search algorithm for finding intersection candidates. More...

Public Member Functions
	TYPEDEF_ERR_INFO (EI_ElemLast, int)
	TYPEDEF_ERR_INFO (EI_ElemNew, int)
	TYPEDEF_ERR_INFO (EI_RegLast, std::string)
	TYPEDEF_ERR_INFO (EI_RegNew, std::string)
	DECLARE_EXCEPTION (ExcDuplicateBoundary,<< "Duplicate boundary elements! \n"<< "Element id: "<< EI_ElemLast::val<< " on region name: "<< EI_RegLast::val<< "\n"<< "Element id: "<< EI_ElemNew::val<< " on region name: "<< EI_RegNew::val<< "\n")
	Mesh ()
	Mesh (Input::Record in_record, MPI_Comm com=MPI_COMM_WORLD)
virtual	~Mesh ()
	Destructor. More...
virtual unsigned int	n_nodes () const
unsigned int	n_boundaries () const
unsigned int	n_edges () const
Edge	edge (uint edge_idx) const
Boundary	boundary (uint edge_idx) const
unsigned int	n_corners ()
const RegionDB &	region_db () const
virtual Partitioning *	get_part ()
virtual const LongIdx *	get_local_part ()
Distribution *	get_el_ds () const
LongIdx *	get_row_4_el () const
LongIdx *	get_el_4_loc () const
Distribution *	get_node_ds () const
LongIdx *	get_node_4_loc () const
unsigned int	n_local_nodes () const
MPI_Comm	get_comm () const
MixedMeshIntersections &	mixed_intersections ()
unsigned int	n_sides () const
unsigned int	n_vb_neighbours () const
unsigned int	max_edge_sides (unsigned int dim) const
void	read_gmsh_from_stream (istream &in)
void	init_from_input ()
void	setup_topology ()
void	elements_id_maps (vector< LongIdx > &bulk_elements_id, vector< LongIdx > &boundary_elements_id) const
virtual std::shared_ptr< std::vector< LongIdx > >	check_compatible_mesh (Mesh &input_mesh)
virtual ElementAccessor< 3 >	element_accessor (unsigned int idx) const
	Create and return ElementAccessor to element of given idx. More...
NodeAccessor< 3 >	node (unsigned int idx) const
	Create and return NodeAccessor to node of given idx. More...
void	read_regions_from_input (Input::Array region_list)
vector< vector< unsigned int > > const &	node_elements ()
void	check_and_finish ()
std::vector< BoundingBox >	get_element_boxes ()
	Compute bounding boxes of elements contained in mesh. More...
const BIHTree &	get_bih_tree ()
	Getter for BIH. Creates and compute BIH at first call. More...
void	intersect_element_lists (vector< unsigned int > const &nodes_list, vector< unsigned int > &intersection_element_list)
void	add_node (unsigned int node_id, arma::vec3 coords)
	Add new node of given id and coordinates to mesh. More...
void	add_element (unsigned int elm_id, unsigned int dim, unsigned int region_id, unsigned int partition_id, std::vector< unsigned int > node_ids)
	Add new element of given id to mesh. More...
void	add_physical_name (unsigned int dim, unsigned int id, std::string name)
	Add new node of given id and coordinates to mesh. More...
FilePath	mesh_file ()
	Return FilePath object representing "mesh_file" input key. More...
IntersectionSearch	get_intersection_search ()
	Getter for input type selection for intersection search algorithm. More...
double	global_snap_radius () const
	Maximal distance of observe point from Mesh relative to its size. More...
void	init_element_vector (unsigned int size)
	Initialize element_vec_, set size and reset counters of boundary and bulk elements. More...
void	init_node_vector (unsigned int size)
	Initialize node_vec_, set size. More...
virtual Range< ElementAccessor< 3 > >	elements_range () const
	Returns range of bulk elements. More...
Range< NodeAccessor< 3 > >	node_range () const
	Returns range of nodes. More...
Range< Edge >	edge_range () const
	Returns range of edges. More...
virtual unsigned int	n_elements (bool boundary=false) const
	Returns count of boundary or bulk elements. More...
int	elem_index (int elem_id) const
	For element of given elem_id returns index in element_vec_ or (-1) if element doesn't exist. More...
int	find_elem_id (unsigned int pos) const
	Return element id (in GMSH file) of element of given position in element vector. More...
int	node_index (int node_id) const
	For node of given node_id returns index in element_vec_ or (-1) if node doesn't exist. More...
int	find_node_id (unsigned int pos) const
	Return node id (in GMSH file) of node of given position in node vector. More...
void	check_element_size (unsigned int elem_idx) const
	Check if given index is in element_vec_. More...
void	create_boundary_elements ()
	Create boundary elements from data of temporary structure, this method MUST be call after read mesh from. More...
void	permute_tetrahedron (unsigned int elm_idx, std::vector< unsigned int > permutation_vec)
	Permute nodes of 3D elements of given elm_idx. More...
void	permute_triangle (unsigned int elm_idx, std::vector< unsigned int > permutation_vec)
	Permute nodes of 2D elements of given elm_idx. More...
BCMesh *	get_bc_mesh ()
	Create boundary mesh if doesn't exist and return it. More...

Static Public Member Functions
static const Input::Type::Selection &	get_input_intersection_variant ()
	The definition of input record for selection of variant of file format. More...
static const Input::Type::Record &	get_input_type ()

Public Attributes
vector< BoundaryData >	boundary_
std::shared_ptr< MixedMeshIntersections >	intersections
vector< vector< unsigned int > >	master_elements
DuplicateNodes *	tree
vector< Neighbour >	vb_neighbours_
int	n_insides
int	n_exsides
int	n_sides_
int	n_lines
int	n_triangles
int	n_tetrahedras
vector< vector< vector< unsigned int > > >	side_nodes
vector< vector< unsigned int > >	node_elements_
	For each node the vector contains a list of elements that use this node. More...

Static Public Attributes
static const unsigned int	undef_idx =-1

Protected Member Functions
void	init ()
void	make_neighbours_and_edges ()
void	make_edge_permutations ()
void	create_node_element_lists ()
bool	find_lower_dim_element (vector< unsigned int > &element_list, unsigned int dim, unsigned int &element_idx)
bool	same_sides (const SideIter &si, vector< unsigned int > &side_nodes)
void	element_to_neigh_vb ()
void	count_element_types ()
void	count_side_types ()
void	check_mesh_on_read ()
void	modify_element_ids (const RegionDB::MapElementIDToRegionID &map)
Element *	add_element_to_vector (int id)
	Adds element to mesh data structures (element_vec_, element_ids_), returns pointer to this element. More...
void	init_element (Element *ele, unsigned int elm_id, unsigned int dim, RegionIdx region_idx, unsigned int partition_id, std::vector< unsigned int > node_ids)
	Initialize element. More...
void	output_internal_ngh_data ()
	Output of neighboring data into raw output. More...

Protected Attributes
unsigned int	n_bb_neigh
unsigned int	n_vb_neigh
unsigned int	max_edge_sides_ [3]
	Maximal number of sides per one edge in the actual mesh (set in make_neighbours_and_edges()). More...
RegionDB	region_db_
std::shared_ptr< Partitioning >	part_
std::shared_ptr< BIHTree >	bih_tree_
Input::Record	in_record_
MPI_Comm	comm_
vector< Element >	element_vec_
vector< ElementTmpData >	bc_element_tmp_
	Hold data of boundary elements during reading mesh (allow to preserve correct order during reading of mix bulk-boundary element) More...
unsigned int	bulk_size_
	Count of bulk elements. More...
unsigned int	boundary_loaded_size_
	Count of boundary elements loaded from mesh file. More...
BidirectionalMap< int >	element_ids_
	Maps element ids to indexes into vector element_vec_. More...
Armor::Array< double >	nodes_
BidirectionalMap< int >	node_ids_
	Maps node ids to indexes into vector node_vec_. More...
std::vector< EdgeData >	edges
	Vector of MH edges, this should not be part of the geometrical mesh. More...

Private Member Functions
void	distribute_nodes ()
	Fill array node_4_loc_ and create object node_ds_ according to element distribution. More...

Private Attributes
LongIdx *	row_4_el
	Index set assigning to global element index the local index used in parallel vectors. More...
LongIdx *	el_4_loc
	Index set assigning to local element index its global index. More...
Distribution *	el_ds
	Parallel distribution of elements. More...
LongIdx *	node_4_loc_
	Index set assigning to local node index its global index. More...
Distribution *	node_ds_
	Parallel distribution of nodes. Depends on elements distribution. More...
unsigned int	n_local_nodes_
	Hold number of local nodes (own + ghost), value is equal with size of node_4_loc array. More...
BCMesh *	bc_mesh_
	Boundary mesh, object is created only if it's necessary. More...
ofstream	raw_ngh_output_file

Friends
class	Edge
class	Side
class	RegionSetBase
class	Element
class	BIHTree
class	Boundary
class	BCMesh
template<int spacedim>
class	ElementAccessor
template<int spacedim>
class	NodeAccessor

Detailed Description

Definition at line 78 of file mesh.h.

Member Typedef Documentation

typedef enum Mesh::IntersectionSearch Mesh::IntersectionSearch

Types of search algorithm for finding intersection candidates.

Member Enumeration Documentation

anonymous enum

Labels for coordinate indexes in arma::vec3 representing vectors and points.

Enumerator
x_coord
y_coord
z_coord

Definition at line 109 of file mesh.h.

enum Mesh::IntersectionSearch

Types of search algorithm for finding intersection candidates.

Enumerator
BIHsearch
BIHonly
BBsearch

Definition at line 93 of file mesh.h.

Constructor & Destructor Documentation

Mesh::Mesh

(

)

Empty constructor.

Use only for unit tests!!!

Definition at line 100 of file mesh.cc.

Mesh::Mesh	(	Input::Record	in_record,
		MPI_Comm	com = MPI_COMM_WORLD
	)

Constructor from an input record. Do not process input record. That is done in init_from_input.

Definition at line 115 of file mesh.cc.

Mesh::~Mesh ( )

virtual

Destructor.

Definition at line 205 of file mesh.cc.

Member Function Documentation

void Mesh::add_element	(	unsigned int	elm_id,
		unsigned int	dim,
		unsigned int	region_id,
		unsigned int	partition_id,
		std::vector< unsigned int >	node_ids
	)

Add new element of given id to mesh.

Definition at line 1075 of file mesh.cc.

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Element * Mesh::add_element_to_vector ( int  id )

protected

Adds element to mesh data structures (element_vec_, element_ids_), returns pointer to this element.

Definition at line 1146 of file mesh.cc.

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void Mesh::add_node	(	unsigned int	node_id,
		arma::vec3	coords
	)

Add new node of given id and coordinates to mesh.

Definition at line 1068 of file mesh.cc.

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void Mesh::add_physical_name	(	unsigned int	dim,
		unsigned int	id,
		std::string	name
	)

Add new node of given id and coordinates to mesh.

Definition at line 1063 of file mesh.cc.

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Boundary Mesh::boundary

(

uint

edge_idx

)

const

Definition at line 260 of file mesh.cc.

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void Mesh::check_and_finish

(

)

Check usage of regions, set regions to elements defined by user, close RegionDB

Definition at line 1020 of file mesh.cc.

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std::shared_ptr< std::vector< LongIdx > > Mesh::check_compatible_mesh ( Mesh &  input_mesh )

virtual

Reimplemented in BCMesh.

Definition at line 892 of file mesh.cc.

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void Mesh::check_element_size ( unsigned int  elem_idx ) const

inline

Check if given index is in element_vec_.

Definition at line 1171 of file mesh.cc.

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void Mesh::check_mesh_on_read ( )

protected

Check the element quality and remove unused nodes.

Definition at line 323 of file mesh.cc.

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void Mesh::count_element_types ( )

protected

Definition at line 279 of file mesh.cc.

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void Mesh::count_side_types ( )

protected

Definition at line 419 of file mesh.cc.

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void Mesh::create_boundary_elements

(

)

Create boundary elements from data of temporary structure, this method MUST be call after read mesh from.

Definition at line 1261 of file mesh.cc.

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void Mesh::create_node_element_lists ( )

protected

Create element lists for nodes in Mesh::nodes_elements.

Definition at line 433 of file mesh.cc.

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Mesh::DECLARE_EXCEPTION	(	ExcDuplicateBoundary	,
		<< "Duplicate boundary elements! \n"<< "Element id: "<< EI_ElemLast::val<< " on region name: "<< EI_RegLast::val<< "\n"<< "Element id: "<< EI_ElemNew::val<< " on region name: "<< EI_RegNew::val<< "\n"
	)

void Mesh::distribute_nodes ( )

private

Fill array node_4_loc_ and create object node_ds_ according to element distribution.

Definition at line 1313 of file mesh.cc.

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Edge Mesh::edge

(

uint

edge_idx

)

const

Definition at line 254 of file mesh.cc.

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Range< Edge > Mesh::edge_range

(

)

const

Returns range of edges.

Definition at line 1165 of file mesh.cc.

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int Mesh::elem_index ( int  elem_id ) const

inline

For element of given elem_id returns index in element_vec_ or (-1) if element doesn't exist.

Definition at line 353 of file mesh.h.

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ElementAccessor< 3 > Mesh::element_accessor ( unsigned int  idx ) const

virtual

Create and return ElementAccessor to element of given idx.

Reimplemented in BCMesh.

Definition at line 839 of file mesh.cc.

void Mesh::element_to_neigh_vb ( )

protected

Definition at line 789 of file mesh.cc.

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void Mesh::elements_id_maps	(	vector< LongIdx > &	bulk_elements_id,
		vector< LongIdx > &	boundary_elements_id
	)		const

Returns vector of ID numbers of elements, either bulk or bc elemnts.

Definition at line 851 of file mesh.cc.

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Range< ElementAccessor< 3 > > Mesh::elements_range ( ) const

virtual

Returns range of bulk elements.

Reimplemented in BCMesh.

Definition at line 1153 of file mesh.cc.

int Mesh::find_elem_id ( unsigned int  pos ) const

inline

Return element id (in GMSH file) of element of given position in element vector.

Definition at line 359 of file mesh.h.

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bool Mesh::find_lower_dim_element ( vector< unsigned int > &  element_list, unsigned int  dim, unsigned int &  element_idx  )

protected

Remove elements with dimension not equal to dim from element_list. Index of the first element of dimension dim-1, is returned in element_idx. If no such element is found the method returns false, if one such element is found the method returns true, if more elements are found we report an user input error.

Definition at line 478 of file mesh.cc.

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int Mesh::find_node_id ( unsigned int  pos ) const

inline

Return node id (in GMSH file) of node of given position in node vector.

Definition at line 371 of file mesh.h.

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BCMesh * Mesh::get_bc_mesh

(

)

Create boundary mesh if doesn't exist and return it.

Definition at line 1307 of file mesh.cc.

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const BIHTree & Mesh::get_bih_tree

(

)

Getter for BIH. Creates and compute BIH at first call.

Definition at line 1050 of file mesh.cc.

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MPI_Comm Mesh::get_comm ( ) const

inline

Returns MPI communicator of the mesh.

Definition at line 175 of file mesh.h.

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LongIdx* Mesh::get_el_4_loc ( ) const

inline

Definition at line 160 of file mesh.h.

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Distribution* Mesh::get_el_ds ( ) const

inline

Definition at line 154 of file mesh.h.

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std::vector< BoundingBox > Mesh::get_element_boxes

(

)

Compute bounding boxes of elements contained in mesh.

Definition at line 1035 of file mesh.cc.

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const Input::Type::Selection & Mesh::get_input_intersection_variant ( )

static

The definition of input record for selection of variant of file format.

Definition at line 63 of file mesh.cc.

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const IT::Record & Mesh::get_input_type ( )

static

Definition at line 74 of file mesh.cc.

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Mesh::IntersectionSearch Mesh::get_intersection_search

(

)

Getter for input type selection for intersection search algorithm.

Definition at line 154 of file mesh.cc.

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const LongIdx * Mesh::get_local_part ( )

virtual

Reimplemented in BCMesh.

Definition at line 270 of file mesh.cc.

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LongIdx* Mesh::get_node_4_loc ( ) const

inline

Definition at line 166 of file mesh.h.

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Distribution* Mesh::get_node_ds ( ) const

inline

Definition at line 163 of file mesh.h.

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Partitioning * Mesh::get_part ( )

virtual

Returns pointer to partitioning object. Partitioning is created during setup_topology.

Reimplemented in BCMesh.

Definition at line 266 of file mesh.cc.

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LongIdx* Mesh::get_row_4_el ( ) const

inline

Definition at line 157 of file mesh.h.

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double Mesh::global_snap_radius

(

)

const

Maximal distance of observe point from Mesh relative to its size.

Definition at line 1059 of file mesh.cc.

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void Mesh::init ( )

protected

Part of the constructor whichdoes not depedn on input record. Initializes node-side numbering according to RefElement.

Definition at line 160 of file mesh.cc.

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void Mesh::init_element ( Element *  ele, unsigned int  elm_id, unsigned int  dim, RegionIdx  region_idx, unsigned int  partition_id, std::vector< unsigned int >  node_ids  )

protected

Initialize element.

Definition at line 1098 of file mesh.cc.

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void Mesh::init_element_vector

(

unsigned int

size

)

Initialize element_vec_, set size and reset counters of boundary and bulk elements.

Definition at line 1127 of file mesh.cc.

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void Mesh::init_from_input

(

)

Reads input record, creates regions, read the mesh, setup topology. creates region sets.

void Mesh::init_node_vector

(

unsigned int

size

)

Initialize node_vec_, set size.

Definition at line 1139 of file mesh.cc.

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void Mesh::intersect_element_lists	(	vector< unsigned int > const &	nodes_list,
		vector< unsigned int > &	intersection_element_list
	)

Find intersection of element lists given by Mesh::node_elements_ for elements givne by nodes_list parameter. The result is placed into vector intersection_element_list. If the node_list is empty, and empty intersection is returned.

Definition at line 446 of file mesh.cc.

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void Mesh::make_edge_permutations ( )

protected

On edges sharing sides of many elements it may happen that each side has its nodes ordered in a different way. This method finds the permutation for each side so as to obtain the ordering of side 0.

Definition at line 708 of file mesh.cc.

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void Mesh::make_neighbours_and_edges ( )

protected

This replaces read_neighbours() in order to avoid using NGH preprocessor.

TODO:

• Avoid maps:

  5) need not to have temporary array for Edges, only postpone setting pointers in elements and set them after edges are found; we can temporary save Edge index instead of pointer in Neigbours and elements

  6) Try replace Edge * by indexes in Neigbours and elements (anyway we have mesh pointer in elements so it is accessible also from Neigbours)

TODO:

• use std::is_any for setting is_neigbour
• possibly make appropriate constructors for Edge and Neighbour
• check side!=-1 when searching neigbouring element
• process boundary elements first, there should be no Neigh, but check it set Edge and boundary there

Definition at line 515 of file mesh.cc.

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unsigned int Mesh::max_edge_sides ( unsigned int  dim ) const

inline

Returns maximal number of sides of one edge, which connects elements of dimension dim.

Parameters

dim	Dimension of elements sharing the edge.

Definition at line 188 of file mesh.h.

FilePath Mesh::mesh_file ( )

inline

Return FilePath object representing "mesh_file" input key.

Definition at line 318 of file mesh.h.

MixedMeshIntersections & Mesh::mixed_intersections

(

)

Definition at line 822 of file mesh.cc.

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void Mesh::modify_element_ids ( const RegionDB::MapElementIDToRegionID &  map )

protected

Possibly modify region id of elements sets by user in "regions" part of input file.

TODO: This method needs check in issue 'Review mesh setting'. Changes have been done during generalized region key and may be causing problems during the further development.

Definition at line 296 of file mesh.cc.

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unsigned int Mesh::n_boundaries ( ) const

inline

Definition at line 130 of file mesh.h.

unsigned int Mesh::n_corners

(

)

Definition at line 244 of file mesh.cc.

unsigned int Mesh::n_edges ( ) const

inline

Definition at line 134 of file mesh.h.

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virtual unsigned int Mesh::n_elements ( bool  boundary = false ) const

inlinevirtual

Returns count of boundary or bulk elements.

Reimplemented in BCMesh.

Definition at line 344 of file mesh.h.

unsigned int Mesh::n_local_nodes ( ) const

inline

Definition at line 169 of file mesh.h.

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virtual unsigned int Mesh::n_nodes ( ) const

inlinevirtual

Reimplemented in BCMesh.

Definition at line 126 of file mesh.h.

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unsigned int Mesh::n_sides

(

)

const

Definition at line 230 of file mesh.cc.

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unsigned int Mesh::n_vb_neighbours

(

)

const

Definition at line 239 of file mesh.cc.

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NodeAccessor< 3 > Mesh::node

(

unsigned int

idx

)

const

Create and return NodeAccessor to node of given idx.

Definition at line 845 of file mesh.cc.

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vector< vector< unsigned int > > const & Mesh::node_elements

(

)

Returns nodes_elements vector, if doesn't exist creates its.

Definition at line 1119 of file mesh.cc.

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int Mesh::node_index ( int  node_id ) const

inline

For node of given node_id returns index in element_vec_ or (-1) if node doesn't exist.

Definition at line 365 of file mesh.h.

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Range< NodeAccessor< 3 > > Mesh::node_range

(

)

const

Returns range of nodes.

Definition at line 1159 of file mesh.cc.

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void Mesh::output_internal_ngh_data ( )

protected

Output of neighboring data into raw output.

Definition at line 1179 of file mesh.cc.

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void Mesh::permute_tetrahedron	(	unsigned int	elm_idx,
		std::vector< unsigned int >	permutation_vec
	)

Permute nodes of 3D elements of given elm_idx.

Definition at line 1273 of file mesh.cc.

void Mesh::permute_triangle	(	unsigned int	elm_idx,
		std::vector< unsigned int >	permutation_vec
	)

Permute nodes of 2D elements of given elm_idx.

Definition at line 1290 of file mesh.cc.

void Mesh::read_gmsh_from_stream

(

istream &

in

)

Reads mesh from stream.

Method is especially used in unit tests.

void Mesh::read_regions_from_input

(

Input::Array

region_list

)

Reads elements and their affiliation to regions and region sets defined by user in input file Format of input record is defined in method RegionSetBase::get_input_type()

Parameters

region_list

Array input AbstractRecords which define regions, region sets and elements

Definition at line 1010 of file mesh.cc.

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const RegionDB& Mesh::region_db ( ) const

inline

Definition at line 143 of file mesh.h.

bool Mesh::same_sides ( const SideIter &  si, vector< unsigned int > &  side_nodes  )

protected

Returns true if side si has same nodes as in the list side_nodes.

Definition at line 498 of file mesh.cc.

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void Mesh::setup_topology

(

)

Initialize all mesh structures from raw information about nodes and elements (including boundary elements). Namely: create remaining boundary elements and Boundary objects, find edges and compatible neighborings.

Definition at line 388 of file mesh.cc.

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Mesh::TYPEDEF_ERR_INFO	(	EI_ElemLast	,
		int
	)

Mesh::TYPEDEF_ERR_INFO	(	EI_ElemNew	,
		int
	)

Mesh::TYPEDEF_ERR_INFO	(	EI_RegLast	,
		std::string
	)

Mesh::TYPEDEF_ERR_INFO	(	EI_RegNew	,
		std::string
	)

Friends And Related Function Documentation

friend class BCMesh

friend

Definition at line 549 of file mesh.h.

friend class BIHTree

friend

Definition at line 547 of file mesh.h.

friend class Boundary

friend

Definition at line 548 of file mesh.h.

friend class Edge

friend

Definition at line 543 of file mesh.h.

friend class Element

friend

Definition at line 546 of file mesh.h.

template<int spacedim>

friend class ElementAccessor

friend

Definition at line 550 of file mesh.h.

template<int spacedim>

friend class NodeAccessor

friend

Definition at line 551 of file mesh.h.

friend class RegionSetBase

friend

Definition at line 545 of file mesh.h.

friend class Side

friend

Definition at line 544 of file mesh.h.

Member Data Documentation

vector<ElementTmpData> Mesh::bc_element_tmp_

protected

Hold data of boundary elements during reading mesh (allow to preserve correct order during reading of mix bulk-boundary element)

Definition at line 520 of file mesh.h.

BCMesh* Mesh::bc_mesh_

private

Boundary mesh, object is created only if it's necessary.

Definition at line 573 of file mesh.h.

std::shared_ptr<BIHTree> Mesh::bih_tree_

protected

BIH Tree for intersection and observe points lookup.

Definition at line 499 of file mesh.h.

vector<BoundaryData> Mesh::boundary_

mutable

Vector of boundary sides where is prescribed boundary condition. TODO: apply all boundary conditions in the main assembling cycle over elements and remove this Vector.

Definition at line 246 of file mesh.h.

unsigned int Mesh::boundary_loaded_size_

protected

Count of boundary elements loaded from mesh file.

Definition at line 526 of file mesh.h.

unsigned int Mesh::bulk_size_

protected

Count of bulk elements.

Definition at line 523 of file mesh.h.

MPI_Comm Mesh::comm_

protected

MPI communicator used for partitioning and ...

Definition at line 510 of file mesh.h.

std::vector<EdgeData> Mesh::edges

protected

Vector of MH edges, this should not be part of the geometrical mesh.

Definition at line 540 of file mesh.h.

LongIdx* Mesh::el_4_loc

private

Index set assigning to local element index its global index.

Definition at line 563 of file mesh.h.

Distribution* Mesh::el_ds

private

Parallel distribution of elements.

Definition at line 565 of file mesh.h.

BidirectionalMap<int> Mesh::element_ids_

protected

Maps element ids to indexes into vector element_vec_.

Definition at line 529 of file mesh.h.

vector<Element> Mesh::element_vec_

protected

Vector of elements of the mesh.

Store all elements of the mesh in order bulk elements - boundary elements

Definition at line 517 of file mesh.h.

Input::Record Mesh::in_record_

protected

Accessor to the input record for the mesh.

Definition at line 505 of file mesh.h.

std::shared_ptr<MixedMeshIntersections> Mesh::intersections

Vector of individual intersections of two elements. This is enough for local mortar.

Definition at line 254 of file mesh.h.

vector<vector<unsigned int> > Mesh::master_elements

Definition at line 260 of file mesh.h.

unsigned int Mesh::max_edge_sides_[3]

protected

Maximal number of sides per one edge in the actual mesh (set in make_neighbours_and_edges()).

Definition at line 481 of file mesh.h.

unsigned int Mesh::n_bb_neigh

protected

Definition at line 478 of file mesh.h.

int Mesh::n_exsides

Definition at line 270 of file mesh.h.

int Mesh::n_insides

Definition at line 269 of file mesh.h.

int Mesh::n_lines

Definition at line 273 of file mesh.h.

unsigned int Mesh::n_local_nodes_

private

Hold number of local nodes (own + ghost), value is equal with size of node_4_loc array.

Definition at line 571 of file mesh.h.

int Mesh::n_sides_

mutable

Definition at line 271 of file mesh.h.

int Mesh::n_tetrahedras

Definition at line 275 of file mesh.h.

int Mesh::n_triangles

Definition at line 274 of file mesh.h.

unsigned int Mesh::n_vb_neigh

protected

Definition at line 478 of file mesh.h.

LongIdx* Mesh::node_4_loc_

private

Index set assigning to local node index its global index.

Definition at line 567 of file mesh.h.

Distribution* Mesh::node_ds_

private

Parallel distribution of nodes. Depends on elements distribution.

Definition at line 569 of file mesh.h.

vector<vector<unsigned int> > Mesh::node_elements_

For each node the vector contains a list of elements that use this node.

Definition at line 350 of file mesh.h.

BidirectionalMap<int> Mesh::node_ids_

protected

Maps node ids to indexes into vector node_vec_.

Definition at line 537 of file mesh.h.

Armor::Array<double> Mesh::nodes_

protected

Vector of nodes of the mesh.

Definition at line 534 of file mesh.h.

std::shared_ptr<Partitioning> Mesh::part_

protected

Mesh partitioning. Created in setup_topology.

Definition at line 494 of file mesh.h.

ofstream Mesh::raw_ngh_output_file

private

Definition at line 575 of file mesh.h.

RegionDB Mesh::region_db_

protected

Database of regions (both bulk and boundary) of the mesh. Regions are logical parts of the domain that allows setting of different data and boundary conditions on them.

Definition at line 490 of file mesh.h.

LongIdx* Mesh::row_4_el

private

Index set assigning to global element index the local index used in parallel vectors.

Definition at line 561 of file mesh.h.

vector< vector< vector<unsigned int> > > Mesh::side_nodes

Definition at line 287 of file mesh.h.

DuplicateNodes* Mesh::tree

Definition at line 262 of file mesh.h.

const unsigned int Mesh::undef_idx =-1

static

Definition at line 104 of file mesh.h.

vector<Neighbour> Mesh::vb_neighbours_

Vector of compatible neighbourings.

Definition at line 267 of file mesh.h.

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The documentation for this class was generated from the following files:

• /opt/flow123d/flow123d/src/mesh/mesh.h
• /opt/flow123d/flow123d/src/mesh/mesh.cc