Class for the mesh partitioning. This should provide: More...

#include <partitioning.hh>

Collaboration diagram for Partitioning:

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Public Member Functions
	TYPEDEF_ERR_INFO (EI_MeshFile, std::string)

	TYPEDEF_ERR_INFO (EI_NElems, unsigned int)

	TYPEDEF_ERR_INFO (EI_NProcs, unsigned int)

	DECLARE_INPUT_EXCEPTION (ExcDecomposeMesh,<< "Number of processors "<< EI_NProcs::val<< " greater then number of elements "<< EI_NElems::val<< ". Can not make partitioning of the mesh "<< EI_MeshFile::qval<< ".\n")

	Partitioning (Mesh *mesh, Input::Record in)

const Distribution *	get_init_distr () const

const LongIdx *	get_loc_part () const

shared_ptr< vector< int > >	subdomain_id_field_data ()

void	id_maps (int n_ids, LongIdx id_4_old, Distribution &new_ds, LongIdx &id_4_loc, LongIdx &new_4_id)

	~Partitioning ()
	Destructor. More...

Static Public Member Functions
static const Input::Type::Selection &	get_graph_type_sel ()
	Input specification objects. More...

static const Input::Type::Selection &	get_tool_sel ()

static const Input::Type::Record &	get_input_type ()

static void	id_maps (int n_ids, LongIdx id_4_old, const Distribution &old_ds, LongIdx loc_part, Distribution &new_ds, LongIdx &id_4_loc, LongIdx *&new_4_id)

Private Types
enum	PartitionTool { PETSc, METIS }

enum	PartitionGraphType { any_neighboring, any_weight_lower_dim_cuts, same_dimension_neighboring }

Private Member Functions
void	make_element_connection_graph ()

void	make_partition ()

Private Attributes
Mesh *	mesh_
	The input mesh. More...

Input::Record	in_
	Input Record accessor. More...

SparseGraph *	graph_
	Graph used to partitioning the mesh. More...

LongIdx *	loc_part_
	Partition numbers for local elements in original distribution of elements given be `init_el_ds_`. More...

Distribution *	init_el_ds_
	Original distribution of elements. Depends on type of partitioner. More...

shared_ptr< vector< int > >	seq_part_
	Sequential partitioning for output. More...

Detailed Description

Class for the mesh partitioning. This should provide:

construction of cenectivity graph from the mesh
call a partitioner
provide new element numbering and new element distribution (global numbers for the local part - at least for ghost part) (+ old indices of elements for the local part of the mesh - in order to do not change current implementation) TODO:
deal with partitioining of boundary mesh

Definition at line 52 of file partitioning.hh.

Member Enumeration Documentation

enum Partitioning::PartitionGraphType

private

Types of weights used for element partitioning.

Enumerator
any_neighboring	Add edge for any pair of neighboring elements.
any_weight_lower_dim_cuts	Same as before and assign higher weight to cuts of lower dimension in order to make them stick to one face.
same_dimension_neighboring	Add edge for any pair of neighboring elements of same dimension (bad for matrix multiply)

Definition at line 112 of file partitioning.hh.

enum Partitioning::PartitionTool

private

Types of partitioning algorithms.

Enumerator
PETSc	Use PETSc interface to various partitioing tools.
METIS	Use direct interface to Metis.

Definition at line 104 of file partitioning.hh.

Constructor & Destructor Documentation

Partitioning::Partitioning	(	Mesh *	mesh,
		Input::Record	in
	)

Constructor. A pointer to the mesh and accessor to an input record have to be provided.

Definition at line 62 of file partitioning.cc.

Partitioning::~Partitioning ( )

Destructor.

Definition at line 70 of file partitioning.cc.

Member Function Documentation

Partitioning::DECLARE_INPUT_EXCEPTION	(	ExcDecomposeMesh	,
		<< "Number of processors "<< EI_NProcs::val<< " greater then number of elements "<< EI_NElems::val<< ". Can not make partitioning of the mesh "<< EI_MeshFile::qval<< ".\n"
	)

const IT::Selection & Partitioning::get_graph_type_sel ( )

static

Input specification objects.

Definition at line 32 of file partitioning.cc.

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const Distribution * Partitioning::get_init_distr ( ) const

Get initial distribution.

Definition at line 79 of file partitioning.cc.

const IT::Record & Partitioning::get_input_type ( )

static

Definition at line 50 of file partitioning.cc.

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const LongIdx * Partitioning::get_loc_part ( ) const

Get local part of mesh partition.

Definition at line 86 of file partitioning.cc.

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const IT::Selection & Partitioning::get_tool_sel ( )

static

Definition at line 43 of file partitioning.cc.

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void Partitioning::id_maps	(	int	n_ids,
		LongIdx *	id_4_old,
		Distribution *&	new_ds,
		LongIdx *&	id_4_loc,
		LongIdx *&	new_4_id
	)

Obsolete see source file for doc.

Definition at line 231 of file partitioning.cc.

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void Partitioning::id_maps	(	int	n_ids,
		LongIdx *	id_4_old,
		const Distribution &	old_ds,
		LongIdx *	loc_part,
		Distribution *&	new_ds,
		LongIdx *&	id_4_loc,
		LongIdx *&	new_4_id
	)

static

Old UGLY, PETSC dependent method for getting new numbering after partitioning.

n_ids - given maximal ID used in id_4_old id_4_old - given array of size init_el_ds_.size() - assign ID to an old index

new_ds - new distribution of elements according to current distributed partitioning loc_part_ id_4_loc - IDs for local elements in new distribution, has size new_ds->lsize() new_4_id - for given ID, the new index, -1 for unknown IDs

Definition at line 186 of file partitioning.cc.

void Partitioning::make_element_connection_graph ( )

private

Creates sparse parallel graph from the mesh (using algorithm given by the key "graph_type" of the input record accessor in_

Definition at line 93 of file partitioning.cc.

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void Partitioning::make_partition ( )

private

Creates sparse parallel graph from the mesh (using algorithm given by the key "graph_type" of the input record accessor in_) calls partitioning tool given by the key "tool" of the input record accessor in_) result is local part of the partitioning. Can be retrieved by get_loc_part().

Definition at line 143 of file partitioning.cc.

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shared_ptr< vector< int > > Partitioning::subdomain_id_field_data ( )

Creates and returns vector with element partitioning for output.

Definition at line 237 of file partitioning.cc.

Partitioning::TYPEDEF_ERR_INFO	(	EI_MeshFile	,
		std::string
	)

Partitioning::TYPEDEF_ERR_INFO	(	EI_NElems	,
		unsigned	int
	)

Partitioning::TYPEDEF_ERR_INFO	(	EI_NProcs	,
		unsigned	int
	)

Member Data Documentation

SparseGraph* Partitioning::graph_

private

Graph used to partitioning the mesh.

Definition at line 124 of file partitioning.hh.

Input::Record Partitioning::in_

private

Input Record accessor.

Definition at line 121 of file partitioning.hh.

Distribution* Partitioning::init_el_ds_

private

Original distribution of elements. Depends on type of partitioner.

Definition at line 128 of file partitioning.hh.

LongIdx* Partitioning::loc_part_

private

Partition numbers for local elements in original distribution of elements given be init_el_ds_.

Definition at line 126 of file partitioning.hh.

Mesh* Partitioning::mesh_

private

The input mesh.

Definition at line 119 of file partitioning.hh.

shared_ptr< vector<int> > Partitioning::seq_part_

private

Sequential partitioning for output.

Definition at line 130 of file partitioning.hh.

The documentation for this class was generated from the following files:

/opt/flow123d/flow123d/src/mesh/partitioning.hh
/opt/flow123d/flow123d/src/mesh/partitioning.cc

Public Member Functions

Static Public Member Functions

Private Types

Private Member Functions

Private Attributes

Detailed Description

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation