SparseGraphPETSC Class Reference

#include <sparse_graph.hh>

Inheritance diagram for SparseGraphPETSC:

Collaboration diagram for SparseGraphPETSC:

Public Member Functions
	SparseGraphPETSC (int n_vtxs, MPI_Comm comm)
	SparseGraphPETSC (const Distribution &distr)
virtual void	partition (int *loc_part)
Public Member Functions inherited from SparseGraph
	SparseGraph (const Distribution &distr)
	SparseGraph (int loc_size, MPI_Comm comm)
void	set_edge (const int a, const int b, int weight=1)
void	set_vtx_position (const int vtx, const float xyz[3], int weight=1)
void	finalize ()
	Make sparse graph structures: rows, adj. More...
bool	check_subgraph_connectivity (int *part)
void	DFS (int vtx)
Distribution	get_distr ()
void	view ()
bool	is_symmetric ()
virtual	~SparseGraph ()

Private Member Functions
virtual void	allocate_sparse_graph (int lsize_vtxs, int lsize_adj)
virtual	~SparseGraphPETSC ()

Private Attributes
Mat	petsc_adj_mat
MatPartitioning	petsc_part
IS	part_IS

Additional Inherited Members
Protected Attributes inherited from SparseGraph
Distribution	vtx_distr
	distribution of vertexes More...
int *	rows
float *	vtx_XYZ
	optional vertex coordinates (global array) More...
int *	vtx_weights
	Vertex weights for computations (optional). More...
int *	adj
	sparse adjency More...
int *	adj_weights
int *	part_to_check
	created partitioning used through check of connectivity More...
int	proc_to_check
	subgraph to check More...
std::vector< int >	checked_vtx
	coloring of DFS algorithm More...
vector< stack< Edge > >	adj_of_proc
	storage for graph edges for individual processors More...

Detailed Description

Sparse Graph that use PETSC for partitioning.

Definition at line 170 of file sparse_graph.hh.

Constructor & Destructor Documentation

SparseGraphPETSC::SparseGraphPETSC ( int  n_vtxs, MPI_Comm  comm  )

inline

Construct empty graph only from number of vertices, use default initial distribution.

Definition at line 178 of file sparse_graph.hh.

SparseGraphPETSC::SparseGraphPETSC ( const Distribution &  distr )

inline

Construct empty graph with given distribution of vertices.

Definition at line 184 of file sparse_graph.hh.

SparseGraphPETSC::~SparseGraphPETSC ( )

privatevirtual

Definition at line 346 of file sparse_graph.cc.

Member Function Documentation

void SparseGraphPETSC::allocate_sparse_graph ( int  lsize_vtxs, int  lsize_adj  )

privatevirtual

Use virtual method for allocation since for PETSC interface we have to use PetscMalloc.

Implements SparseGraph.

Definition at line 319 of file sparse_graph.cc.

void SparseGraphPETSC::partition ( int *  loc_part )

virtual

Implementation of partitioning using PETSC interface to various partitioning software.

Implements SparseGraph.

Definition at line 327 of file sparse_graph.cc.

Member Data Documentation

IS SparseGraphPETSC::part_IS

private

Definition at line 194 of file sparse_graph.hh.

Mat SparseGraphPETSC::petsc_adj_mat

private

Definition at line 192 of file sparse_graph.hh.

MatPartitioning SparseGraphPETSC::petsc_part

private

Definition at line 193 of file sparse_graph.hh.

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The documentation for this class was generated from the following files:

• /opt/flow123d/flow123d/src/la/sparse_graph.hh
• /opt/flow123d/flow123d/src/la/sparse_graph.cc