Abstract class of sorption model in case dual porosity is considered. More...
#include <sorption.hh>
Inheritance diagram for SorptionDual:
Collaboration diagram for SorptionDual:
Public Member Functions | |
| SorptionDual (Mesh &init_mesh, Input::Record in_rec, const string &output_conc_name, const string &output_selection_name) | |
| Constructor. More... | |
| ~SorptionDual (void) | |
| Destructor. More... | |
| void | set_porosity_immobile (Field< 3, FieldValue< 3 >::Scalar > &por_imm) |
| Sets the immobile porosity field. More... | |
 Public Member Functions inherited from SorptionBase | |
| TYPEDEF_ERR_INFO (EI_ArrayName, std::string) | |
| DECLARE_INPUT_EXCEPTION (ExcSubstanceCountMatch,<< "The size of the input array "<< EI_ArrayName::qval<< " does not match the number of substances.") | |
| SorptionBase (Mesh &init_mesh, Input::Record in_rec) | |
| virtual | ~SorptionBase (void) |
| void | initialize () override |
| Prepares the object to usage. More... | |
| void | zero_time_step () override |
| void | update_solution (void) override |
| Updates the solution. More... | |
| void | output_data (void) override |
| Output method. More... | |
| bool | evaluate_time_constraint (double &time_constraint) override |
| Computes a constraint for time step. More... | |
| Public Member Functions inherited from ReactionTerm | |
| TYPEDEF_ERR_INFO (EI_Substance, std::string) | |
| TYPEDEF_ERR_INFO (EI_Model, std::string) | |
| DECLARE_INPUT_EXCEPTION (ExcUnknownSubstance,<< "Unknown substance name: "<< EI_Substance::qval) | |
| DECLARE_INPUT_EXCEPTION (ExcWrongDescendantModel,<< "Impossible descendant model: "<< EI_Model::qval) | |
| ReactionTerm (Mesh &init_mesh, Input::Record in_rec) | |
| Constructor. More... | |
| ~ReactionTerm (void) | |
| Destructor. More... | |
| void | choose_next_time (void) override |
| Disable changes in TimeGovernor by empty method. More... | |
| ReactionTerm & | substances (SubstanceList &substances) |
| Sets the names of substances considered in transport. More... | |
| ReactionTerm & | output_stream (std::shared_ptr< OutputTime > ostream) |
| Sets the output stream which is given from transport class. More... | |
| ReactionTerm & | concentration_matrix (double **concentration, Distribution *conc_distr, int *el_4_loc, int *row_4_el) |
| Public Member Functions inherited from EquationBase | |
| EquationBase () | |
| EquationBase (Mesh &mesh, const Input::Record in_rec) | |
| virtual | ~EquationBase () |
| virtual void | set_time_upper_constraint (double dt, std::string message) |
| virtual void | set_time_lower_constraint (double dt, std::string message) |
| TimeGovernor & | time () |
| virtual void | set_time_governor (TimeGovernor &time) |
| double | planned_time () |
| double | solved_time () |
| Mesh & | mesh () |
| TimeMark::Type | mark_type () |
| FieldSet & | data () |
| virtual void | get_solution_vector (double *&vector, unsigned int &size) |
| virtual void | get_parallel_solution_vector (Vec &vector) |
Protected Member Functions | |
| virtual void | isotherm_reinit (std::vector< Isotherm > &isotherms, const ElementAccessor< 3 > &elm)=0 |
| Reinitializes the isotherm. More... | |
| Protected Member Functions inherited from SorptionBase | |
| SorptionBase () | |
| void | make_reactions () |
| void | initialize_substance_ids () |
| Reads names of substances from input and creates indexing to global vector of substance. More... | |
| void | initialize_from_input () |
| Initializes private members of sorption from the input record. More... | |
| void | initialize_fields () |
| Initializes field sets. More... | |
| void | set_initial_condition () |
| Reads and sets initial condition for concentration in solid. More... | |
| void | allocate_output_mpi (void) |
| Allocates petsc vectors, prepares them for output and creates vector scatter. More... | |
| void | output_vector_gather (void) override |
| Gathers all the parallel vectors to enable them to be output. More... | |
| double ** | compute_reaction (double **concentrations, int loc_el) override |
| void | make_tables (void) |
Protected Attributes | |
| Field< 3, FieldValue< 3 >::Scalar > | immob_porosity_ |
| Protected Attributes inherited from SorptionBase | |
| EqData * | data_ |
| Pointer to equation data. The object is constructed in descendants. More... | |
| unsigned int | n_interpolation_steps_ |
| double | solvent_density_ |
| std::vector< double > | solubility_vec_ |
| std::vector< double > | table_limit_ |
| std::vector< std::vector< Isotherm > > | isotherms |
| unsigned int | n_substances_ |
| std::vector< unsigned int > | substance_global_idx_ |
| Mapping from local indexing of substances to global. More... | |
| double ** | conc_solid |
| std::shared_ptr< ReactionTerm > | reaction_liquid |
| std::shared_ptr< ReactionTerm > | reaction_solid |
| VecScatter | vconc_out_scatter |
| Output vector scatter. More... | |
| Vec * | vconc_solid |
| PETSC sorbed concentration vector (parallel). More... | |
| std::vector< VectorSeqDouble > | conc_solid_out |
| sorbed concentration array output (gathered - sequential) More... | |
| Protected Attributes inherited from ReactionTerm | |
| double ** | concentration_matrix_ |
| int * | el_4_loc_ |
| Indices of elements belonging to local dofs. More... | |
| int * | row_4_el_ |
| Indices of rows belonging to elements. More... | |
| Distribution * | distribution_ |
| Pointer to reference to distribution of elements between processors. More... | |
| SubstanceList | substances_ |
| Names belonging to substances. More... | |
| std::shared_ptr< OutputTime > | output_stream_ |
| Pointer to a transport output stream. More... | |
| Protected Attributes inherited from EquationBase | |
| bool | equation_empty_ |
| flag is true if only default constructor was called More... | |
| Mesh * | mesh_ |
| TimeGovernor * | time_ |
| Input::Record | input_record_ |
| FieldSet * | eq_data_ |
| std::shared_ptr< Balance > | balance_ |
| object for calculation and writing the mass balance to file. More... | |
Additional Inherited Members | |
| Static Public Member Functions inherited from SorptionBase | |
| static const Input::Type::Record & | get_input_type () |
| static Input::Type::Instance | make_output_type (const string &equation_name, const string &output_field_name) |
| Static Public Member Functions inherited from ReactionTerm | |
| static Input::Type::Abstract & | it_abstract_term () |
| static Input::Type::Abstract & | it_abstract_mobile_term () |
| static Input::Type::Abstract & | it_abstract_immobile_term () |
| static Input::Type::Abstract & | it_abstract_reaction () |
Detailed Description
Abstract class of sorption model in case dual porosity is considered.
Definition at line 65 of file sorption.hh.
Constructor & Destructor Documentation
| SorptionDual::SorptionDual | ( | Mesh & | init_mesh, |
| Input::Record | in_rec, | ||
| const string & | output_conc_name, | ||
| const string & | output_selection_name | ||
| ) |
Constructor.
Definition at line 114 of file sorption.cc.
| SorptionDual::~SorptionDual | ( | void | ) |
Destructor.
Definition at line 128 of file sorption.cc.
Member Function Documentation
|
protectedpure virtual |
|
inline |
Sets the immobile porosity field.
Definition at line 77 of file sorption.hh.
Member Data Documentation
|
protected |
Definition at line 86 of file sorption.hh.
The documentation for this class was generated from the following files:
- /opt/flow123d/flow123d/src/reaction/sorption.hh
- /opt/flow123d/flow123d/src/reaction/sorption.cc
