#include <linsys_PETSC.hh>

Inheritance diagram for LinSys_PETSC:

Collaboration diagram for LinSys_PETSC:

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Classes
struct	PetscScalar2Double_

Public Types
typedef LinSys	FactoryBaseType

Public Types inherited from LinSys
enum	SetValuesMode { INSERT =INSERT_VALUES, ADD =ADD_VALUES, ALLOCATE, DONE, NONE }

Public Member Functions
	LinSys_PETSC (const Distribution *rows_ds, const std::string &params="")

	LinSys_PETSC (LinSys_PETSC &other)

void	set_tolerances (double r_tol, double a_tol, unsigned int max_it) override

const Distribution *	get_ds ()

const Mat *	get_matrix () override

const Vec *	get_rhs () override

PetscErrorCode	set_matrix (Mat &matrix, MatStructure str) override

PetscErrorCode	set_rhs (Vec &rhs) override

PetscErrorCode	mat_zero_entries () override

PetscErrorCode	rhs_zero_entries () override

void	start_allocation () override

void	start_add_assembly () override

void	start_insert_assembly () override

void	mat_set_values (int nrow, int rows, int ncol, int cols, double *vals) override

void	rhs_set_values (int nrow, int rows, double vals) override

void	preallocate_values (int nrow, int rows, int ncol, int cols)

void	preallocate_matrix ()

void	finish_assembly () override

void	finish_assembly (MatAssemblyType assembly_type)

void	apply_constrains (double scalar=1.) override

void	set_initial_guess_nonzero (bool set_nonzero=true)

int	solve () override

double	get_absolute_accuracy () override

void	view () override

void	set_from_input (const Input::Record in_rec) override

double	get_solution_precision () override

double	compute_residual () override

	~LinSys_PETSC ()

Public Member Functions inherited from LinSys
	LinSys (const Distribution *rows_ds)

	LinSys (LinSys &other)

unsigned int	size ()

unsigned int	vec_lsize ()

void	set_matrix_changed ()

void	set_rhs_changed ()

bool	is_matrix_changed ()

bool	is_rhs_changed ()

const Vec &	get_solution ()

void	set_solution (double *sol_array)

double *	get_solution_array ()

void	mat_set_value (int row, int col, double val)

void	rhs_set_value (int row, double val)

void	set_values (int nrow, int rows, int ncol, int cols, PetscScalar mat_vals, PetscScalar rhs_vals)
	Set values in the system matrix and values in the right-hand side vector on corresponding rows. More...

void	set_values (std::vector< int > &row_dofs, std::vector< int > &col_dofs, const arma::mat &matrix, const arma::vec &rhs, const arma::vec &row_solution, const arma::vec &col_solution)

void	add_constraint (int row, double value)

double	get_residual_norm ()

double	get_relative_accuracy ()

void	set_symmetric (bool flag=true)

bool	is_symmetric ()

void	set_positive_definite (bool flag=true)

void	set_negative_definite (bool flag=true)

bool	is_positive_definite ()

bool	is_negative_definite ()

bool	is_new ()

bool	is_preallocated ()

void	set_spd_via_symmetric_general (bool flag=true)

bool	is_spd_via_symmetric_general ()

virtual	~LinSys ()

Static Public Member Functions
static const Input::Type::Record &	get_input_type ()

Static Public Member Functions inherited from LinSys
static Input::Type::Abstract &	get_input_type ()

Protected Attributes
std::string	params_
	command-line-like options for the PETSc solver More...

bool	init_guess_nonzero
	flag for starting from nonzero guess More...

Mat	matrix_
	Petsc matrix of the problem. More...

Vec	rhs_
	PETSc vector constructed with vx array. More...

Vec	residual_

double *	v_rhs_
	local RHS array pointing to Vec rhs_ More...

Vec	on_vec_
	Vectors for counting non-zero entries in diagonal block. More...

Vec	off_vec_
	Vectors for counting non-zero entries in off-diagonal block. More...

double	solution_precision_

KSP	system

KSPConvergedReason	reason

Protected Attributes inherited from LinSys
double	r_tol_
	relative tolerance of linear solver More...

double	a_tol_
	absolute tolerance of linear solver More...

unsigned int	max_it_
	maximum number of iterations of linear solver More...

MPI_Comm	comm_

SetValuesMode	status_
	Set value status of the linear system. More...

const unsigned	lsize_
	local number of matrix rows (non-overlapping division of rows) More...

unsigned	size_
	global number of matrix rows, i.e. problem size More...

const Distribution *	rows_ds_
	final distribution of rows of MH matrix More...

bool	symmetric_

bool	positive_definite_

bool	negative_definite_

bool	spd_via_symmetric_general_

bool	matrix_changed_
	true if the matrix was changed since the last solve More...

bool	rhs_changed_
	true if the right hand side was changed since the last solve More...

Vec	solution_
	PETSc vector constructed with vb array. More...

double *	v_solution_
	local solution array pointing into Vec solution_ More...

bool	own_solution_
	Indicates if the solution array has been allocated by this class. More...

double	residual_norm_
	local solution array pointing into Vec solution_ More...

ConstraintVec_	constraints_

std::vector< double >	globalSolution_
	global solution in numbering for linear system More...

Input::Record	in_rec_

Private Member Functions
template<typename T >
T *	makePetscPointer_ (std::vector< T > &array)

Static Private Attributes
static const int	registrar = LinSys_PETSC::get_input_type().size()
	Registrar of class to factory. More...

Additional Inherited Members
Protected Types inherited from LinSys
typedef std::pair< unsigned, double >	Constraint_

typedef std::vector< Constraint_ >	ConstraintVec_

Static Protected Attributes inherited from LinSys
static constexpr double	default_r_tol_ = 1e-7

static constexpr double	default_a_tol_ = 1e-11

static constexpr unsigned int	default_max_it_ = 1000

Detailed Description

Definition at line 31 of file linsys_PETSC.hh.

Member Typedef Documentation

typedef LinSys LinSys_PETSC::FactoryBaseType

Definition at line 35 of file linsys_PETSC.hh.

Constructor & Destructor Documentation

LinSys_PETSC::LinSys_PETSC	(	const Distribution *	rows_ds,
		const std::string &	params = `""`
	)

Definition at line 57 of file linsys_PETSC.cc.

LinSys_PETSC::LinSys_PETSC ( LinSys_PETSC & other )

Copy constructor.

Definition at line 77 of file linsys_PETSC.cc.

LinSys_PETSC::~LinSys_PETSC ( )

Definition at line 425 of file linsys_PETSC.cc.

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Member Function Documentation

void LinSys_PETSC::apply_constrains ( double scalar = 1. )

overridevirtual

Apply constrains to assembled matrix. Constrains are given by pairs: global row index, value. i.e. typedef pair<unsigned int, double> Constrain;

What is th meaning of ( const double factor ) form Cambridge code?

Implements LinSys.

Definition at line 272 of file linsys_PETSC.cc.

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double LinSys_PETSC::compute_residual ( )

overridevirtual

Explicitly compute residual and its norm for current solution.

Implements LinSys.

Reimplemented in SchurComplement.

Definition at line 455 of file linsys_PETSC.cc.

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void LinSys_PETSC::finish_assembly ( )

overridevirtual

Finish assembly of the whole system. For PETSC this should call MatEndAssembly with MAT_FINAL_ASSEMBLY

Implements LinSys.

Definition at line 247 of file linsys_PETSC.cc.

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void LinSys_PETSC::finish_assembly ( MatAssemblyType assembly_type )

Definition at line 253 of file linsys_PETSC.cc.

double LinSys_PETSC::get_absolute_accuracy ( )

inlineoverridevirtual

Returns information on absolute solver accuracy

Reimplemented from LinSys.

Definition at line 118 of file linsys_PETSC.hh.

const Distribution* LinSys_PETSC::get_ds ( )

inline

Returns whole Distribution class for distribution of the solution.

Definition at line 52 of file linsys_PETSC.hh.

const it::Record & LinSys_PETSC::get_input_type ( )

static

Definition at line 32 of file linsys_PETSC.cc.

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const Mat* LinSys_PETSC::get_matrix ( )

inlineoverridevirtual

Returns PETSC matrix (only for PETSC solvers)

If matrix is changed, method set_matrix_changed() must be called. Example: MatDiagonalSet(schur->get_matrix(), new_diagonal, ADD_VALUES); schur->set_matrix_changed();

Reimplemented from LinSys.

Definition at line 57 of file linsys_PETSC.hh.

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const Vec* LinSys_PETSC::get_rhs ( )

inlineoverridevirtual

Returns RHS vector (only for PETSC solvers)

If vector is changed, method set_rhs_changed() must be called. Example: VecScale(schur->get_rhs(), -1.0); schur->set_rhs_changed();

Reimplemented from LinSys.

Definition at line 62 of file linsys_PETSC.hh.

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double LinSys_PETSC::get_solution_precision ( )

overridevirtual

Get precision of solving

Implements LinSys.

Reimplemented in SchurComplement.

Definition at line 449 of file linsys_PETSC.cc.

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template<typename T >

T* LinSys_PETSC::makePetscPointer_ ( std::vector< T > & array )

inlineprivate

Definition at line 141 of file linsys_PETSC.hh.

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void LinSys_PETSC::mat_set_values	(	int	nrow,
		int *	rows,
		int	ncol,
		int *	cols,
		double *	vals
	)

overridevirtual

Assembly full rectangular submatrix into the system matrix. Should be virtual, implemented differently in particular solvers.

Implements LinSys.

Definition at line 147 of file linsys_PETSC.cc.

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PetscErrorCode LinSys_PETSC::mat_zero_entries ( )

inlineoverridevirtual

Clears entries of the matrix

Reimplemented from LinSys.

Definition at line 79 of file linsys_PETSC.hh.

void LinSys_PETSC::preallocate_matrix ( )

Definition at line 201 of file linsys_PETSC.cc.

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void LinSys_PETSC::preallocate_values	(	int	nrow,
		int *	rows,
		int	ncol,
		int *	cols
	)

Definition at line 183 of file linsys_PETSC.cc.

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void LinSys_PETSC::rhs_set_values	(	int	nrow,
		int *	rows,
		double *	vals
	)

overridevirtual

Set values of the system right-hand side. Should be virtual, implemented differently in particular solvers.

Implements LinSys.

Definition at line 166 of file linsys_PETSC.cc.

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PetscErrorCode LinSys_PETSC::rhs_zero_entries ( )

inlineoverridevirtual

Clears entries of the right-hand side

Reimplemented from LinSys.

Definition at line 85 of file linsys_PETSC.hh.

void LinSys_PETSC::set_from_input ( const Input::Record in_rec )

overridevirtual

Sets specific parameters of LinSys_PETSC defined by user in input file and used to calculate

Reimplemented from LinSys.

Reimplemented in SchurComplement.

Definition at line 437 of file linsys_PETSC.cc.

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void LinSys_PETSC::set_initial_guess_nonzero ( bool set_nonzero = true )

Definition at line 317 of file linsys_PETSC.cc.

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PetscErrorCode LinSys_PETSC::set_matrix	(	Mat &	matrix,
		MatStructure	str
	)

inlineoverridevirtual

Sets PETSC matrix (only for PETSC solvers)

Reimplemented from LinSys.

Definition at line 67 of file linsys_PETSC.hh.

PetscErrorCode LinSys_PETSC::set_rhs ( Vec & rhs )

inlineoverridevirtual

Sets RHS vector (only for PETSC solvers)

Reimplemented from LinSys.

Definition at line 73 of file linsys_PETSC.hh.

void LinSys_PETSC::set_tolerances	(	double	r_tol,
		double	a_tol,
		unsigned int	max_it
	)

overridevirtual

Set relative tolerance, absolute tolerance, and maximum number of iterations of the linear solver.

For each of these three parameters we first look for the value at user input if not set we use the value provided to this method and finally the default values are set by the call of this method in the constructor.

Implements LinSys.

Reimplemented in SchurComplement.

Definition at line 86 of file linsys_PETSC.cc.

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int LinSys_PETSC::solve ( )

overridevirtual

Solve the system and return convergence reason.

Implements LinSys.

Reimplemented in SchurComplement.

Definition at line 323 of file linsys_PETSC.cc.

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void LinSys_PETSC::start_add_assembly ( )

overridevirtual

Switch linear system into adding assembly. (the only one supported by triplets ??)

Reimplemented from LinSys.

Definition at line 111 of file linsys_PETSC.cc.

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void LinSys_PETSC::start_allocation ( )

overridevirtual

Switch linear system into allocating assembly. (only for PETSC_MPIAIJ_preallocate_by_assembly)

Reimplemented from LinSys.

Definition at line 102 of file linsys_PETSC.cc.

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void LinSys_PETSC::start_insert_assembly ( )

overridevirtual

Switch linear system into insert assembly. (not currently used)

Reimplemented from LinSys.

Definition at line 129 of file linsys_PETSC.cc.

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void LinSys_PETSC::view ( )

overridevirtual

Output the system in the Matlab format possibly with given ordering. Rather we shoud provide output operator <<, since it is more flexible.

Reimplemented from LinSys.

Definition at line 399 of file linsys_PETSC.cc.

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Member Data Documentation

bool LinSys_PETSC::init_guess_nonzero

protected

flag for starting from nonzero guess

Definition at line 160 of file linsys_PETSC.hh.

Mat LinSys_PETSC::matrix_

protected

Petsc matrix of the problem.

Definition at line 162 of file linsys_PETSC.hh.

Vec LinSys_PETSC::off_vec_

protected

Vectors for counting non-zero entries in off-diagonal block.

Definition at line 169 of file linsys_PETSC.hh.

Vec LinSys_PETSC::on_vec_

protected

Vectors for counting non-zero entries in diagonal block.

Definition at line 168 of file linsys_PETSC.hh.

std::string LinSys_PETSC::params_

protected

command-line-like options for the PETSc solver

Definition at line 158 of file linsys_PETSC.hh.

KSPConvergedReason LinSys_PETSC::reason

protected

Definition at line 175 of file linsys_PETSC.hh.

const int LinSys_PETSC::registrar = LinSys_PETSC::get_input_type().size()

staticprivate

Registrar of class to factory.

Definition at line 137 of file linsys_PETSC.hh.

Vec LinSys_PETSC::residual_

protected

Definition at line 164 of file linsys_PETSC.hh.

Vec LinSys_PETSC::rhs_

protected

PETSc vector constructed with vx array.

Definition at line 163 of file linsys_PETSC.hh.

double LinSys_PETSC::solution_precision_

protected

Definition at line 172 of file linsys_PETSC.hh.

KSP LinSys_PETSC::system

protected

Definition at line 174 of file linsys_PETSC.hh.

double* LinSys_PETSC::v_rhs_

protected

local RHS array pointing to Vec rhs_

Definition at line 166 of file linsys_PETSC.hh.

The documentation for this class was generated from the following files:

/opt/flow123d/flow123d/src/la/linsys_PETSC.hh
/opt/flow123d/flow123d/src/la/linsys_PETSC.cc

Classes

Public Types

Public Member Functions

Static Public Member Functions

Protected Attributes

Private Member Functions

Static Private Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation