system.cc

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/*!
 *
 * Copyright (C) 2007 Technical University of Liberec.  All rights reserved.
 *
 * Please make a following refer to Flow123d on your project site if you use the program for any purpose,
 * especially for academic research:
 * Flow123d, Research Centre: Advanced Remedial Technologies, Technical University of Liberec, Czech Republic
 *
 * This program is free software; you can redistribute it and/or modify it under the terms
 * of the GNU General Public License version 3 as published by the Free Software Foundation.
 *
 * This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
 * without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
 * See the GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License along with this program; if not,
 * write to the Free Software Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 021110-1307, USA.
 *
 *
 * $Id$
 * $Revision$
 * $LastChangedBy$
 * $LastChangedDate$
 *
 * @file
 * @ingroup system
 * @brief  Various system-wide functions
 *
 */

#include <cstring>
#include <cstdarg>
#include <ctime>
#include <cstdlib>
#include <sys/stat.h>
#include <cerrno>
#include <sstream>

#include <fstream>
#include <string>
#include "mpi.h"

#include "global_defs.h"
#include "system/system.hh"
//#include "io/read_ini.h"
#include "system/xio.h"
#include "system/file_path.hh"

#include <boost/algorithm/string/predicate.hpp>
#include <boost/algorithm/string/trim.hpp>
#include <boost/format.hpp>



SystemInfo sys_info;


void system_set_from_options()
{
    //sys_info.verbosity = OptGetInt( "Run", "Screen_verbosity", "0" );

}


/// @brief INTERNAL DEFINITIONS FOR XPRINTF
/// @{

struct MsgFmt {
    int  num;           ///< format number
    bool log;           ///< log the message - YES/NO
    bool mpi;           ///< treat as global message (invoke MPI_Barrier() when printing)
    int screen;         ///< print to stdout,stderr,NULL
    bool stop;          ///< terminate the program
    const char * head;  ///< message formating string
};

#define SCR_NONE    0
#define SCR_STDOUT  1
#define SCR_STDERR  2

/// configuration table for individual message types defined in system.h
/// Msg type    Log    mpi      screen      Stop    message header
#define NUM_OF_FMTS     8
static struct MsgFmt msg_fmt[] = {
    {Msg,       true,  false,   SCR_STDOUT, false,  NULL},
    {MsgDbg,    true,  false,   SCR_STDOUT, false,  "    DBG (%s, %s(), %d):"},
    {MsgLog,    true,  false,   SCR_NONE,   false,  NULL},
    {MsgVerb,   false, false,   SCR_STDOUT, false,  NULL},
    {Warn,      true,  false,   SCR_STDERR, false,  "Warning (%s, %s(), %d):\n"},
    {UsrErr,    true,  false,   SCR_NONE,   true,   "User Error (%s, %s(), %d):\n"},
    {Err,       true,  false,   SCR_NONE,   true,   "Error (%s, %s(), %d):\n"},
    {PrgErr,    true,  false,   SCR_NONE,   true,   "Internal Error (%s, %s(), %d):\n"}
};

/// @}

/*!
 * @brief Multi-purpose printing routine: messages, warnings, errors
 * @param[in] xprintf_file   current file
 * @param[in] xprintf_func   current function
 * @param[in] xprintf_line   current line number
 * @param[in] type           message type
 * @param[in] fmt            message format
 * @return      Same as printf, what internal printing routine returns.
 */
int _xprintf(const char * const xprintf_file, const char * const xprintf_func, const int xprintf_line, MessageType type, const char * const fmt, ... )
{
    struct MsgFmt   mf;
    int rc;
    FILE *screen=NULL;

    static int mpi_msg_id = 0;
    int ierr;

    if ((type == MsgVerb) && (sys_info.verbosity <= 0))
        return 0;

    if ((type < 0) || (type >= NUM_OF_FMTS))
        type = Msg;
    mf = msg_fmt[type];

    // determine output stream
    switch (mf.screen) {
        case SCR_STDOUT : screen=stdout; break;
        case SCR_STDERR : screen=stderr; break;
        case SCR_NONE : screen=NULL; break;
        default: screen=NULL;
    }


#ifdef MPI_PRINTALL
    //print msg header with mpi_id to distinguish the message origin
    if (screen)
        fprintf(screen,"[mpi_id=%d] ", sys_info.my_proc );
    if (mf.log && sys_info.log)
        fprintf(sys_info.log,"[mpi_id=%d] ", sys_info.my_proc );
#else
    //if not PRINTALL, allow console output only for MPI master, no need to print mpi_id
    if ( (screen) && ( sys_info.my_proc != 0 ) )
        screen = NULL;
#endif

    {
        va_list argptr;
        if (mf.stop) {
            char format_message[1024];
            va_start( argptr, fmt );
            vsprintf(format_message, fmt, argptr);
            va_end( argptr );

            // explicit flush of all streams
            fflush(NULL);
            F_STACK_SHOW( stderr );
            BOOST_THROW_EXCEPTION( ExcXprintfMsg()
                << EI_XprintfHeader( boost::str(boost::format(mf.head) % xprintf_file % xprintf_func % xprintf_line) )
                << EI_XprintfMessage( format_message ) );
        }
    }

    //generate barrier and unique ID for MPI messages
    if (mf.mpi) {
        ierr = MPI_Barrier(sys_info.comm);
        if (ierr != MPI_SUCCESS ) {
            printf("MPI_Barrier() error in xprintf()\n"); //can not call xprintf() when xprintf() is failing
            exit( EXIT_FAILURE );
        }

        // print global msg_id
        if (screen)
            fprintf(screen,"[msg_id=%d] ", mpi_msg_id );
        if (mf.log && sys_info.log)
            fprintf(sys_info.log,"[msg_id=%d] ", mpi_msg_id );
        mpi_msg_id++;
    }
#ifndef DEBUG_MESSAGES
    if (type == Warn) mf.head="\nWarning: ";
#endif
    // print head
    if (mf.head) {
        if (screen) fprintf(screen,mf.head,xprintf_file,xprintf_func,xprintf_line);
        if (mf.log && sys_info.log)
            fprintf(sys_info.log,mf.head,xprintf_file,xprintf_func,xprintf_line);
    }
    // print message
    {
        va_list argptr;

        if (mf.log && sys_info.log)
        {
            va_start( argptr, fmt );
            rc=vfprintf(sys_info.log,fmt,argptr); //rc=char written, <0 if err
            va_end( argptr );
            // flush every message (maybe there is a problem in cygwin without that)
            fflush(sys_info.log);
        }

        if (screen)
        {
            va_start( argptr, fmt );
            rc=vfprintf(screen,fmt,argptr);
            va_end( argptr );
            // flush every message (maybe there is a problem in cygwin without that)
            fflush(screen);
        }
    }

    return rc;
}


/*!
 * @brief Memory allocation with checking.
 *
 * Allocates memory block with checking of correct size and successful allocation.
 *
 * @param[in] size  New size for the memory block, in bytes.
 * @return          same as ISO C realloc()
 */
void *xmalloc( size_t size )
{
    void *rc;


    if (size == 0 ) size++;
    //ASSERT( size != 0 ,"Bad requested size (%u bytes) for memory allocation\n", size );
    rc = malloc( size );
    if ( rc == NULL ) xprintf(Err ,"Not enough memory for allocating %u bytes\n", size );

    return(rc);
}

/*!
 * @brief Reallocation of memory block with checking.
 *
 * Reallocates memory block with checking of successful reallocation.
 * The size of the memory block pointed to by the ptr parameter is changed to the size bytes,
 * expanding or reducing the amount of memory available in the block.
 *
 * The function may move the memory block to a new location, in which case the new location
 * is returned. The content of the memory block is preserved up to the lesser of
 * the new and old sizes, even if the block is moved. If the new size is larger, the value
 * of the newly allocated portion is indeterminate.
 *
 * In case that ptr is NULL, the function behaves exactly as malloc,
 * assigning a new block of size bytes and returning a pointer to the beginning of it.
 *
 * In case that the size is 0, the memory previously allocated in ptr is deallocated
 * as if a call to free was made, and a NULL pointer is returned.
 *
 * @param[in] ptr   Pointer to a memory block previously allocated
 * @param[in] size  New size for the memory block, in bytes.
 * @return          same as ISO C realloc()
 */
void * xrealloc( void * ptr, size_t size )
{
    void * rc;

    F_ENTRY;

    rc = realloc( ptr, size );
    if ( rc == NULL ) xprintf(Err ,"Not enough memory for allocating %u bytes\n", size );

    return(rc);
}

/*
void *operator new (std::size_t size, const my_new_t &) throw() {
    return xmalloc(size);
}

void *operator new[] (std::size_t size, const my_new_t &) throw() {
    return xmalloc(size);
}

void operator delete( void *p,  const my_new_t &) throw ()
{
    xfree(p);
}

void operator delete[]( void *p,  const my_new_t &) throw ()
{
    xfree(p);
}
*/

void *operator new (std::size_t size) OPERATOR_NEW_THROW_EXCEPTION {
    return xmalloc(size);
}

void *operator new[] (std::size_t size) OPERATOR_NEW_THROW_EXCEPTION {
    return xmalloc(size);
}

void *operator new[] (std::size_t size, const std::nothrow_t&  ) throw() {
    return xmalloc(size);
}

void operator delete( void *p) throw()
{
    xfree(p);
}

void operator delete[]( void *p) throw()
{
    xfree(p);
}



/*!
 * @brief SYSTEM with err handling
 */
int xsystem( const char *cmd )
{
    int rc;

    F_ENTRY;

    rc = system( cmd );
    INPUT_CHECK(!( rc != 0 ),"Error executing external command: %s\n", cmd );
    return(rc);
}

/*!
 * @brief MAKE BRAND NEW COPY OF STRING
 */
char *xstrcpy( const char *src )
{
    char *rc;
    size_t length;

    F_ENTRY;

    ASSERT(!( src == NULL ),"NULL pointer as argument of function xstrcpy()\n");
    length = strlen( src ) + 1;
    rc = (char*) xmalloc(length * sizeof(char));
    strcpy( rc, src );
    return(rc);
}

/*!
 * @brief      STRTOK WITH ERROR HANDLING and whitespace delimiters
 * @param[in]  s        strtok string pointer
 * @param[in]  position requested position of the token
 * @return              strtok return
 */
char *xstrtok(char *s, int position)
{
    char *rc;
    const char * const whitespace_delim=" \t\r\n";

    F_ENTRY;

    rc = xstrtok( s, whitespace_delim, position);
    return(rc);
}

/*!
 * @brief      STRTOK WITH ERROR HANDLING and user specified delimiters
 * @param[in]  s1       strtok string pointer
 * @param[in]  delim    delimiters
 * @param[in]  position requested position of the token
 * @return              strtok return
 *
 * Function behaves like original strtok
 */
char *xstrtok( char *s1, const char *delim, int position )
{
    char *rc;
    static char * full_string = NULL;
    static int token_count;

    F_ENTRY;

    ASSERT(!( delim == NULL ),"NULL pointer as delimiter in xstrtok()\n");

    if ( s1 )
    {
        if ( !full_string )
        {
            full_string = (char *)xmalloc( LINE_SIZE );
            full_string[0] = 0x0;
        }

        strncpy( full_string, s1, LINE_SIZE );
        token_count = 0;
    }

    INPUT_CHECK( token_count == position || position < 0, "Requested position %d dosn't match token position %d", position, token_count);
    rc = strtok( s1, delim );
    token_count++;

    INPUT_CHECK(!( rc == NULL ),"Missing token no. %d: original string '%s' with delimiters '%s'\n", token_count, full_string, delim );

    return(rc);
}

/*!
 * @brief           Delete trailing whitespace characters (space,tab,CR,NL).
 * @param[in,out] s string to change
 * @return          number of deleted characters
 */
int xchomp( char * s )
{
    int no_erased = 0;
    char * p;

    F_ENTRY;

    ASSERT( s, "Can not chomp NULL string.");

    if ( *s ) //string not empty
    {
        p = s;
        while (*p)
            p++; //find end of string
        p--; //set p to the last character
        while ((p >= s) && ((*p == ' ') || (*p == '\t') || (*p == '\r') || (*p == '\n')))
        {
            *p = 0x0;
            no_erased++;
            p--;
        }
    }
    return(no_erased);
}


/*!
 * @brief MKDIR WITH ERROR HANDLING
 */
int xmkdir( const char *s )
{
    int rc;

    F_ENTRY;

    ASSERT(!( s == NULL ),"NULL pointer as argument of function xmkdir()\n");
    rc = mkdir(s, S_IRWXU); // create dir with rwx perm. for user
    if (errno == EEXIST)
        rc = 0;
    INPUT_CHECK(!( rc != 0 ),"Cannot make directory %s\n", s );

    return(rc);
}

/*!
 * @brief RMDIR with err handling
 */
int xrmdir( const char *s )
{
    int rc;

    F_ENTRY;

    ASSERT(!( s == NULL ),"NULL pointer as argument of function xrmdir()\n");
    rc = rmdir( s );
    INPUT_CHECK(!( rc != 0 ),"Cannot delete directory %s\n", s );
    return(rc);
}

/*!
 * @brief CHDIR WITH ERROR HANDLING
 */
int xchdir( const char *s )
{
    int rc;

    F_ENTRY;

    ASSERT(!( s == NULL ),"NULL pointer as argument of function xchdir()\n");
    rc = chdir( s );
    INPUT_CHECK(!( rc != 0 ),"Cannot change directory to %s\n", s );
    return(rc);
}

/*!
 * @brief DELETE a FILE with error handling
 */
int xremove( const char *fname )
{
    int rc;

    F_ENTRY;

    ASSERT(!( fname == NULL ),"NULL pointer as argument of function xremove()\n");
    if( access( fname , F_OK ) == 0 )
    {
        rc = remove( fname );
        INPUT_CHECK(!( rc != 0 ),"Cannot remove file %s\n", fname );
    }
    else
        xprintf( Warn, "File '%s' does not exist, can not remove. Ignoring.\n", fname );

    return(rc);
}

/*!
 * @brief GET CURRENT WORKING DIRECTORY with error handling
 */
char *xgetcwd( void )
{
    char tmp[PATH_MAX];
    char * rc;

    F_ENTRY;

    rc = getcwd( tmp, PATH_MAX );
    ASSERT( rc,"Cannot get name of current working directory\n");

    return(xstrcpy( tmp ));
}



/*!
 *  @brief Skip to the first line match  @p pattern up to surrounding spaces and case.
 *  @param[in,out]  in          Input stream to search.
 *  @param[in]      pattern     String to look for.
 *  @return                     true - if we have found the section, false otherwise
 */
bool skip_to( istream &in, const string &pattern )
{
    F_ENTRY;
    if (! in.good()) xprintf(PrgErr, "Input stream is not ready for i/o operations. Perhaps missing check about correct open.\n");

    for(std::string line; ! in.eof() ; std::getline(in, line) ) {
        boost::trim(line);
        if ( boost::iequals( line, pattern ) ) return true;
    }

    return false;
}