| allocate_reaction_matrix(void) | Pade_approximant | protected |
| bifurcation | Linear_reaction | protected |
| choose_next_time(void) override | ReactionTerm | virtual |
| compute_reaction(double **concentrations, int loc_el) override | Pade_approximant | virtual |
| concentration_matrix(double **concentration, Distribution *conc_distr, int *el_4_loc, int *row_4_el) | ReactionTerm | inline |
| concentration_matrix_ | ReactionTerm | protected |
| data() | EquationBase | inline |
| den_pol_deg | Pade_approximant | protected |
| distribution | ReactionTerm | protected |
| el_4_loc | ReactionTerm | protected |
| eq_data_ | EquationBase | protected |
| equation_empty_ | EquationBase | protected |
| EquationBase() | EquationBase | |
| EquationBase(Mesh &mesh, const Input::Record in_rec) | EquationBase | |
| evaluate_matrix_polynomial(Mat *Polynomial, Mat *Reaction_matrix, PetscScalar *coef) | Pade_approximant | |
| factorial(int k) | Pade_approximant | protected |
| find_subst_name(const std::string &name) | Linear_reaction | protected |
| get_parallel_solution_vector(Vec &vector) | EquationBase | inlinevirtual |
| get_solution_vector(double *&vector, unsigned int &size) | EquationBase | inlinevirtual |
| half_lives | Linear_reaction | protected |
| init_from_input(Input::Record in_rec) override | Linear_reaction | protectedvirtual |
| initialize() | EquationBase | inlinevirtual |
| input_record_ | EquationBase | protected |
| input_type | Pade_approximant | static |
| input_type_one_decay_substep | Pade_approximant | static |
| input_type_output_record | ReactionTerm | static |
| Linear_reaction(Mesh &init_mesh, Input::Record in_rec) | Linear_reaction | |
| Linear_reaction() | Linear_reaction | protected |
| mark_type() | EquationBase | inline |
| mesh() | EquationBase | inline |
| mesh_ | EquationBase | protected |
| modify_reaction_matrix(void) override | Pade_approximant | virtual |
| names(const std::vector< string > &names) | ReactionTerm | inline |
| names_ | ReactionTerm | protected |
| nom_pol_deg | Pade_approximant | protected |
| output_data(void) | ReactionTerm | inlinevirtual |
| output_stream(OutputTime &ostream) | ReactionTerm | inline |
| output_stream_ | ReactionTerm | protected |
| output_vector_gather(void) | ReactionTerm | inlineprotectedvirtual |
| Pade_approximant(Mesh &mesh, Input::Record in_rec) | Pade_approximant | |
| planned_time() | EquationBase | inline |
| prev_conc | Linear_reaction | protected |
| print_half_lives(int n_subst) | Linear_reaction | protected |
| print_indices(int dec_nr, int n_subst) | Linear_reaction | protected |
| print_reaction_matrix(void) | Linear_reaction | protected |
| reaction_matrix | Linear_reaction | protected |
| Reaction_matrix | Pade_approximant | protected |
| ReactionTerm(Mesh &init_mesh, Input::Record in_rec) | ReactionTerm | |
| release_reaction_matrix() | Linear_reaction | protected |
| row_4_el | ReactionTerm | protected |
| set_time_governor(TimeGovernor &time) | EquationBase | virtual |
| set_time_lower_constraint(double dt) | EquationBase | inlinevirtual |
| set_time_upper_constraint(double dt) | EquationBase | inlinevirtual |
| solved_time() | EquationBase | inline |
| substance_ids | Linear_reaction | protected |
| time() | EquationBase | inline |
| time_ | EquationBase | protected |
| update_solution(void) override | Linear_reaction | virtual |
| zero_time_step() override | Pade_approximant | virtual |
| ~EquationBase() | EquationBase | inlinevirtual |
| ~Linear_reaction(void) | Linear_reaction | |
| ~Pade_approximant(void) | Pade_approximant | |
| ~ReactionTerm(void) | ReactionTerm | |
