| bifurcation_ | LinearReaction | protected |
| choose_next_time(void) override | ReactionTerm | virtual |
| compute_exp_coefs(unsigned int nominator_degree, unsigned int denominator_degree, std::vector< double > &nominator_coefs, std::vector< double > &denominator_coefs) | PadeApproximant | protected |
| compute_reaction(double **concentrations, int loc_el) override | LinearReaction | protectedvirtual |
| concentration_matrix(double **concentration, Distribution *conc_distr, int *el_4_loc, int *row_4_el) | ReactionTerm | inline |
| concentration_matrix_ | ReactionTerm | protected |
| data() | EquationBase | inline |
| denominator_degree_ | PadeApproximant | protected |
| distribution_ | ReactionTerm | protected |
| el_4_loc_ | ReactionTerm | protected |
| eq_data_ | EquationBase | protected |
| equation_empty_ | EquationBase | protected |
| EquationBase() | EquationBase | |
| EquationBase(Mesh &mesh, const Input::Record in_rec) | EquationBase | |
| evaluate_matrix_polynomial(mat &polynomial_matrix, const mat &reaction_matrix, const std::vector< double > &coefs) | PadeApproximant | protected |
| find_subst_name(const std::string &name) | LinearReaction | protected |
| get_parallel_solution_vector(Vec &vector) | EquationBase | inlinevirtual |
| get_solution_vector(double *&vector, unsigned int &size) | EquationBase | inlinevirtual |
| half_lives_ | LinearReaction | protected |
| initialize() override | PadeApproximant | virtual |
| initialize_from_input() | LinearReaction | protected |
| input_record_ | EquationBase | protected |
| input_type | PadeApproximant | static |
| input_type_one_decay_substep | PadeApproximant | static |
| input_type_output_record | ReactionTerm | static |
| LinearReaction(Mesh &init_mesh, Input::Record in_rec) | LinearReaction | |
| mark_type() | EquationBase | inline |
| mesh() | EquationBase | inline |
| mesh_ | EquationBase | protected |
| modify_reaction_matrix(void) override | PadeApproximant | protectedvirtual |
| n_substances_ | LinearReaction | protected |
| names(const std::vector< string > &names) | ReactionTerm | inline |
| names_ | ReactionTerm | protected |
| nominator_degree_ | PadeApproximant | protected |
| output_data(void) | ReactionTerm | inlinevirtual |
| output_stream(OutputTime &ostream) | ReactionTerm | inline |
| output_stream_ | ReactionTerm | protected |
| output_vector_gather(void) | ReactionTerm | inlineprotectedvirtual |
| PadeApproximant(Mesh &mesh, Input::Record in_rec) | PadeApproximant | |
| planned_time() | EquationBase | inline |
| prev_conc_ | LinearReaction | protected |
| print_half_lives() | LinearReaction | protected |
| print_indices(int dec_nr, int n_subst) | LinearReaction | protected |
| print_reaction_matrix(void) | LinearReaction | protected |
| reaction_matrix_ | LinearReaction | protected |
| ReactionTerm(Mesh &init_mesh, Input::Record in_rec) | ReactionTerm | |
| reset_reaction_matrix() | LinearReaction | protected |
| row_4_el_ | ReactionTerm | protected |
| set_time_governor(TimeGovernor &time) | EquationBase | virtual |
| set_time_lower_constraint(double dt) | EquationBase | inlinevirtual |
| set_time_upper_constraint(double dt) | EquationBase | inlinevirtual |
| solved_time() | EquationBase | inline |
| substance_ids_ | LinearReaction | protected |
| time() | EquationBase | inline |
| time_ | EquationBase | protected |
| update_solution(void) override | LinearReaction | virtual |
| zero_time_step() override | PadeApproximant | virtual |
| ~EquationBase() | EquationBase | inlinevirtual |
| ~LinearReaction(void) | LinearReaction | |
| ~PadeApproximant(void) | PadeApproximant | |
| ~ReactionTerm(void) | ReactionTerm | |
