| assemble_ode_matrix(void) override | FirstOrderReaction | protectedvirtual |
| balance_ | EquationBase | protected |
| bifurcation_ | FirstOrderReactionBase | protected |
| choose_next_time(void) override | ReactionTerm | virtual |
| compute_reaction(double **concentrations, int loc_el) override | FirstOrderReactionBase | protectedvirtual |
| concentration_matrix(double **concentration, Distribution *conc_distr, LongIdx *el_4_loc, LongIdx *row_4_el) | ReactionTerm | inline |
| concentration_matrix_ | ReactionTerm | protected |
| data() | EquationBase | inline |
| DECLARE_INPUT_EXCEPTION(ExcUnknownSubstance,<< "Unknown substance name: "<< EI_Substance::qval) | ReactionTerm | |
| DECLARE_INPUT_EXCEPTION(ExcWrongDescendantModel,<< "Impossible descendant model: "<< EI_Model::qval) | ReactionTerm | |
| distribution_ | ReactionTerm | protected |
| dof_handler_ | ReactionTerm | protected |
| el_4_loc_ | ReactionTerm | protected |
| eq_data_ | EquationBase | protected |
| equation_empty_ | EquationBase | protected |
| EquationBase() | EquationBase | |
| EquationBase(Mesh &mesh, const Input::Record in_rec) | EquationBase | |
| evaluate_time_constraint(double &time_constraint) override | FirstOrderReactionBase | virtual |
| FactoryBaseType typedef | FirstOrderReaction | |
| find_subst_name(const std::string &name) | FirstOrderReactionBase | protected |
| FirstOrderReaction(Mesh &init_mesh, Input::Record in_rec) | FirstOrderReaction | |
| FirstOrderReactionBase(Mesh &init_mesh, Input::Record in_rec) | FirstOrderReactionBase | |
| get_input_type() | FirstOrderReaction | static |
| get_input_type_product() | FirstOrderReaction | static |
| get_input_type_reactant() | FirstOrderReaction | static |
| get_input_type_single_reaction() | FirstOrderReaction | static |
| get_parallel_solution_vector(Vec &vector) | EquationBase | inlinevirtual |
| get_solution_vector(double *&vector, unsigned int &size) | EquationBase | inlinevirtual |
| initialize() override | FirstOrderReactionBase | virtual |
| initialize_from_input() override | FirstOrderReaction | protectedvirtual |
| input_record_ | EquationBase | protected |
| it_abstract_immobile_term() | ReactionTerm | static |
| it_abstract_mobile_term() | ReactionTerm | static |
| it_abstract_reaction() | ReactionTerm | static |
| it_abstract_term() | ReactionTerm | static |
| linear_ode_solver_ | FirstOrderReactionBase | protected |
| mark_type() | EquationBase | inline |
| mesh() | EquationBase | inline |
| mesh_ | EquationBase | protected |
| molar_mat_inverse_ | FirstOrderReactionBase | protected |
| molar_matrix_ | FirstOrderReactionBase | protected |
| n_substances_ | FirstOrderReactionBase | protected |
| output_data(void) override | ReactionTerm | inlinevirtual |
| output_stream(std::shared_ptr< OutputTime > ostream) | ReactionTerm | inline |
| output_stream_ | ReactionTerm | protected |
| planned_time() | EquationBase | inline |
| prev_conc_ | FirstOrderReactionBase | protected |
| reaction_matrix_ | FirstOrderReactionBase | protected |
| reaction_rates_ | FirstOrderReaction | protected |
| ReactionTerm(Mesh &init_mesh, Input::Record in_rec) | ReactionTerm | |
| registrar | FirstOrderReaction | privatestatic |
| row_4_el_ | ReactionTerm | protected |
| set_dh(std::shared_ptr< DOFHandlerMultiDim > dof_handler) | ReactionTerm | inline |
| set_time_governor(TimeGovernor &time) | EquationBase | virtual |
| set_time_lower_constraint(double dt, std::string message) | EquationBase | inlinevirtual |
| set_time_upper_constraint(double dt, std::string message) | EquationBase | inlinevirtual |
| solved_time() | EquationBase | inline |
| substance_ids_ | FirstOrderReactionBase | protected |
| substances(SubstanceList &substances) | ReactionTerm | inline |
| substances_ | ReactionTerm | protected |
| time() | EquationBase | inline |
| time_ | EquationBase | protected |
| TYPEDEF_ERR_INFO(EI_Substance, std::string) | ReactionTerm | |
| TYPEDEF_ERR_INFO(EI_Model, std::string) | ReactionTerm | |
| update_solution(void) override | FirstOrderReactionBase | virtual |
| zero_time_step() override | FirstOrderReactionBase | virtual |
| ~EquationBase() | EquationBase | inlinevirtual |
| ~FirstOrderReaction(void) | FirstOrderReaction | |
| ~FirstOrderReactionBase(void) | FirstOrderReactionBase | |
| ~ReactionTerm(void) | ReactionTerm | |
