| balance() const | EquationBase | inline |
| balance_ | EquationBase | protected |
| choose_next_time(void) override | ReactionTerm | virtual |
| clear_max_conc() | SorptionBase | protected |
| compute_reaction(const DHCellAccessor &dh_cell) override | SorptionBase | protectedvirtual |
| concentration_fields(FieldFEScalarVec &conc_mobile) | ReactionTerm | inline |
| DECLARE_EXCEPTION(ExcNotPositiveScaling,<< "Scaling parameter in sorption is not positive. Check the input for rock density and molar mass of "<< EI_Subst::val<< ". substance.\n") | SorptionBase | |
| DECLARE_INPUT_EXCEPTION(ExcSubstanceCountMatch,<< "The size of the input array "<< EI_ArrayName::qval<< " does not match the number of substances.") | SorptionBase | |
| ReactionTerm::DECLARE_INPUT_EXCEPTION(ExcUnknownSubstance,<< "Unknown substance name: "<< EI_Substance::qval) | ReactionTerm | |
| ReactionTerm::DECLARE_INPUT_EXCEPTION(ExcWrongDescendantModel,<< "Impossible descendant model: "<< EI_Model::qval) | ReactionTerm | |
| eq_data_ | SorptionBase | protected |
| eq_data_base_ | ReactionTerm | protected |
| eq_fields_ | SorptionBase | protected |
| eq_fields_base_ | ReactionTerm | protected |
| eq_fieldset() | EquationBase | inline |
| eq_fieldset_ | EquationBase | protected |
| eq_fieldset_ptr() | EquationBase | inline |
| equation_empty_ | EquationBase | protected |
| EquationBase() | EquationBase | |
| EquationBase(Mesh &mesh, const Input::Record in_rec) | EquationBase | |
| FieldFEScalarVec typedef | ReactionTerm | |
| get_input_type() | SorptionBase | static |
| init_condition_assembly_ | SorptionBase | protected |
| init_field_models()=0 | SorptionBase | protectedpure virtual |
| init_user_fields(Input::Array user_fields, FieldSet &output_fields) | EquationBase | |
| initialize() override | SorptionBase | virtual |
| initialize_fields() | SorptionBase | protected |
| initialize_from_input() | SorptionBase | protected |
| initialize_substance_ids() | SorptionBase | protected |
| input_record_ | EquationBase | protected |
| it_abstract_immobile_term() | ReactionTerm | static |
| it_abstract_mobile_term() | ReactionTerm | static |
| it_abstract_reaction() | ReactionTerm | static |
| it_abstract_term() | ReactionTerm | static |
| make_output_type(const string &equation_name, const string &output_field_name, const string &output_field_desc) | SorptionBase | inlinestatic |
| make_reactions() | SorptionBase | protected |
| make_tables(void) | SorptionBase | protected |
| mark_type() | EquationBase | inline |
| mesh() | EquationBase | inline |
| mesh_ | EquationBase | protected |
| n_interpolation_steps_ | SorptionBase | protected |
| output_data(void) override | SorptionBase | virtual |
| output_stream(std::shared_ptr< OutputTime > ostream) | ReactionTerm | inline |
| output_stream_ | ReactionTerm | protected |
| planned_time() | EquationBase | inline |
| reaction_assembly_ | SorptionBase | protected |
| reaction_liquid | SorptionBase | protected |
| reaction_solid | SorptionBase | protected |
| ReactionTerm(Mesh &init_mesh, Input::Record in_rec) | ReactionTerm | |
| record_template() | EquationBase | static |
| set_time_governor(TimeGovernor &time) | EquationBase | virtual |
| set_time_lower_constraint(double dt, std::string message) | EquationBase | inlinevirtual |
| set_time_upper_constraint(double dt, std::string message) | EquationBase | inlinevirtual |
| solved_time() | EquationBase | virtual |
| SorptionBase(Mesh &init_mesh, Input::Record in_rec) | SorptionBase | |
| SorptionBase() | SorptionBase | protected |
| substances(SubstanceList &substances) | ReactionTerm | inline |
| time() | EquationBase | inline |
| time_ | EquationBase | protected |
| TYPEDEF_ERR_INFO(EI_ArrayName, std::string) | SorptionBase | |
| TYPEDEF_ERR_INFO(EI_Subst, unsigned int) | SorptionBase | |
| ReactionTerm::TYPEDEF_ERR_INFO(EI_Substance, std::string) | ReactionTerm | |
| ReactionTerm::TYPEDEF_ERR_INFO(EI_Model, std::string) | ReactionTerm | |
| update_max_conc() | SorptionBase | protected |
| update_solution(void) override | SorptionBase | virtual |
| user_fields_template(std::string equation_name) | EquationBase | static |
| zero_time_step() override | SorptionBase | virtual |
| ~EquationBase() | EquationBase | inlinevirtual |
| ~ReactionTerm(void) | ReactionTerm | |
| ~SorptionBase(void) | SorptionBase | virtual |
